CAZyme3D

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Entry ID

Information for CAZyme ID: AQZ67020.1

Basic Information

GenBank IDAQZ67020.1
FamilyGH55
Sequence Length622
UniProt IDA0A1V0A9W4(100,100)Download
Average pLDDT?93.34
CAZy50 ID23445
CAZy50 RepNo, ACV78769.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1909395
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyStreptosporangiaceae
GenusNonomuraea
Species[Actinomadura] parvosata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTTQPPGGR  APRYGRALLT  ALLTALLAAT  VLSPLSAAPA  SASTAPDLGP  NVTVFDPSMP60
VADIQATLDA  AHAAQVDDEM  GTNRHAYLFK  PGTYGTAEQP  LQIKVGYYTE  IAGLGASPTD120
VVINGKVEVY  NRCLADGGTS  NCLALVNFWR  TLSNLSITIN  AAGQDGCRSS  ANFWAVSQAV180
SLRRLNVTGG  TLSLMDYCTA  GPQYASGGFI  ADSRLPSVTN  GSQQQWLTRN  SEVAGWSNGV240
WNQVFSGVVG  APAETGFPSP  PYTTLDTTPV  SREKPYLYTD  ARGRYTVRVP  AARRDTRGVT300
WSDGLTPGRS  VPLTDFYVAK  PSDSVQDINR  QLARGKNLLL  TPGVYDVARS  IEVKRPGTVV360
LGLGHATLTA  ARGAVPLDVA  DVPGVVVAGV  TIDAGPDKSP  VLLRVGKRHG  QHHGSPDNPT420
TLSDVYFRVG  GPHPGSTDVA  LEVNSDHVLI  DHTWVWRADH  GVEGLNDTQR  WNTNLGRNGA480
LINGDHVTAT  GLFVEHFQQY  NTIWNGDDGT  TILYQNELPY  DPPTQADWMN  GAVEGWAGYK540
VGDRVRRHRL  YGGGVYVFNQ  NNPQIHTENG  FEVPRRAGVR  LHHIMTVNLS  AGVIDHVVNG600
TGDAADTTKV  GTPIYITDYP  TP622

Predicted 3D structure by AlphaFold2 with pLDDT = 93.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH55(299-607)

MTTTQPPGGR  APRYGRALLT  ALLTALLAAT  VLSPLSAAPA  SASTAPDLGP  NVTVFDPSMP60
VADIQATLDA  AHAAQVDDEM  GTNRHAYLFK  PGTYGTAEQP  LQIKVGYYTE  IAGLGASPTD120
VVINGKVEVY  NRCLADGGTS  NCLALVNFWR  TLSNLSITIN  AAGQDGCRSS  ANFWAVSQAV180
SLRRLNVTGG  TLSLMDYCTA  GPQYASGGFI  ADSRLPSVTN  GSQQQWLTRN  SEVAGWSNGV240
WNQVFSGVVG  APAETGFPSP  PYTTLDTTPV  SREKPYLYTD  ARGRYTVRVP  AARRDTRGVT300
WSDGLTPGRS  VPLTDFYVAK  PSDSVQDINR  QLARGKNLLL  TPGVYDVARS  IEVKRPGTVV360
LGLGHATLTA  ARGAVPLDVA  DVPGVVVAGV  TIDAGPDKSP  VLLRVGKRHG  QHHGSPDNPT420
TLSDVYFRVG  GPHPGSTDVA  LEVNSDHVLI  DHTWVWRADH  GVEGLNDTQR  WNTNLGRNGA480
LINGDHVTAT  GLFVEHFQQY  NTIWNGDDGT  TILYQNELPY  DPPTQADWMN  GAVEGWAGYK540
VGDRVRRHRL  YGGGVYVFNQ  NNPQIHTENG  FEVPRRAGVR  LHHIMTVNLS  AGVIDHVVNG600
TGDAADTTKV  GTPIYITDYP  TP622

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help