CAZyme3D

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Entry ID

Information for CAZyme ID: AQT61115.1

Basic Information

GenBank IDAQT61115.1
FamilyCE2
Sequence Length362
UniProt IDA0A1U9NC86(100,100)Download
Average pLDDT?89.91
CAZy50 ID121236
CAZy50 RepNo, WGO99621.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1945512
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusCellvibrio
SpeciesCellvibrio sp. PSBB023

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWKSVLLLSS  VIALSACNHQ  PTNHKATGES  GSAAAVTAQG  FTGEQLRLIG  RFDTSTQGKA60
QFTWPGSAVE  FRFSGTSASI  ALGSTGDVRF  QVDVDGAVQD  LWVKNGEATY  TLASGLTKGE120
HTVRLTRLTE  SFALVTSLLG  DPIVDGKLLP  APAAAPRRLL  VIGDSITAGY  GVEGADQSCH180
YEAHTSNQQL  TYAALAANEL  NADLHAIAWS  GIGAWRSYGE  KTPVNPSILV  RYQRTLADDA240
NSRWDASQYQ  PDAILITIGT  NDYWEGSVSD  DYRAGMKTLI  GMVQADYANK  PVYLILSPML300
GGVQRESQKT  ILGSLVSRNV  KVIDLGKIEP  TDGLGCDWHP  NKITNQRMGK  ALVQQLTTDL360
KW362

Predicted 3D structure by AlphaFold2 with pLDDT = 89.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(158-355)

MWKSVLLLSS  VIALSACNHQ  PTNHKATGES  GSAAAVTAQG  FTGEQLRLIG  RFDTSTQGKA60
QFTWPGSAVE  FRFSGTSASI  ALGSTGDVRF  QVDVDGAVQD  LWVKNGEATY  TLASGLTKGE120
HTVRLTRLTE  SFALVTSLLG  DPIVDGKLLP  APAAAPRRLL  VIGDSITAGY  GVEGADQSCH180
YEAHTSNQQL  TYAALAANEL  NADLHAIAWS  GIGAWRSYGE  KTPVNPSILV  RYQRTLADDA240
NSRWDASQYQ  PDAILITIGT  NDYWEGSVSD  DYRAGMKTLI  GMVQADYANK  PVYLILSPML300
GGVQRESQKT  ILGSLVSRNV  KVIDLGKIEP  TDGLGCDWHP  NKITNQRMGK  ALVQQLTTDL360
KW362

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help