CAZyme3D

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Entry ID

Information for CAZyme ID: AQS65900.1

Basic Information

GenBank IDAQS65900.1
FamilyCBM2, GH5_8
Sequence Length555
UniProt IDA0A1S6J2D0(100,100)Download
Average pLDDT?88.34
CAZy50 ID31500
CAZy50 RepNo, ANN17163.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID68249
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces pactum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTARRDTPE  SLVRLLTGLA  ALLGLVVVGA  LCPAAALARS  PGPQAAGLHI  SDGRLLEGNG60
NDFVMRGVNH  AHTWYPGETQ  SLADVKALGA  NTVRVVLSDG  HRWSENSPED  VAAVVGQCKA120
NRLICVLEVH  DTTGYGEEAA  AGTLDHAADY  WIGLKEVLAG  EEDYVIVNIG  NEPWGNTDPA180
GWTEPTIAAV  EKLRAAGFQH  TIMVDAPNWG  QDWQGVMRAN  ARSVYDADPT  GNLIFSIHMY240
SVYDTAQEIT  DYLNAFVDAG  LPLLIGEFGG  PADQWGDPDE  DTMMATAEQL  GLGYLAWSWS300
GNTDPVLDLA  LDFDPSRLSS  WGERIFHGAD  GIAGTSKEAT  VFGGGDPDDT  QAPTAPGAPS360
ASAVTDTSVT  LGWTAATDNV  GVTGYDVVRV  GDGAETEAAA  STTNTATVTG  LTAGTAYTFA420
VYARDAAGNR  SARSATVDVT  TDEAGGTPGT  TCSVGYRVVG  EWPGGFQGEI  AVRNTGTAPV480
GPWTLAFSFA  DGQTITNMWG  GTPTQNAGAV  SVAPASYTST  IPAGGTVTLG  FTGARGGTNT540
APGVFSLNGT  ACATT555

Predicted 3D structure by AlphaFold2 with pLDDT = 88.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_8(57-304)+CBM2(452-552)

MRTARRDTPE  SLVRLLTGLA  ALLGLVVVGA  LCPAAALARS  PGPQAAGLHI  SDGRLLEGNG60
NDFVMRGVNH  AHTWYPGETQ  SLADVKALGA  NTVRVVLSDG  HRWSENSPED  VAAVVGQCKA120
NRLICVLEVH  DTTGYGEEAA  AGTLDHAADY  WIGLKEVLAG  EEDYVIVNIG  NEPWGNTDPA180
GWTEPTIAAV  EKLRAAGFQH  TIMVDAPNWG  QDWQGVMRAN  ARSVYDADPT  GNLIFSIHMY240
SVYDTAQEIT  DYLNAFVDAG  LPLLIGEFGG  PADQWGDPDE  DTMMATAEQL  GLGYLAWSWS300
GNTDPVLDLA  LDFDPSRLSS  WGERIFHGAD  GIAGTSKEAT  VFGGGDPDDT  QAPTAPGAPS360
ASAVTDTSVT  LGWTAATDNV  GVTGYDVVRV  GDGAETEAAA  STTNTATVTG  LTAGTAYTFA420
VYARDAAGNR  SARSATVDVT  TDEAGGTPGT  TCSVGYRVVG  EWPGGFQGEI  AVRNTGTAPV480
GPWTLAFSFA  DGQTITNMWG  GTPTQNAGAV  SVAPASYTST  IPAGGTVTLG  FTGARGGTNT540
APGVFSLNGT  ACATT555

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help