CAZyme3D

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Entry ID

Information for CAZyme ID: APZ74275.1

Basic Information

GenBank IDAPZ74275.1
FamilyCBM40, GH33
Sequence Length653
UniProt IDA0A2D0WEP9(100,100)Download
Average pLDDT?94.92
CAZy50 ID6159
CAZy50 RepNo, ATD57534.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1502
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium perfringens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

VNNSESLSSL  GEYKDINLES  SNASNITYDL  EKYKNLDEGT  IVVRFNSKDS  KIQSLLGISN60
SKTKNGYFNF  YVTNSRVGFE  LRNQKNEGNT  QSGTENLVHM  YKDVALNEGD  NTVALKIEKN120
KGYKLFLNGK  IIKEVKDTNT  KFLNNIENLD  SAFIGKTNRY  GQSNEYNFKG  NIGFMNIYNE180
PLGDDYLLSK  TGETKAKEEV  LVEGAVKTEP  MDLFHPGFLN  SSNYRIPALF  KTKEGTLIAS240
IDARRHGGAD  APNNDIDTAV  RRSEDGGKTW  DEGQIIMDYP  DKSSVIDTTL  IQDDETGRIF300
LLVTHFPSKY  GFWNAGLGSG  FKNIDGKEYL  CLYDSSGKEF  TVRENVVYDK  DGNKTEYTTN360
ALGDLFRNGT  KIDNINSSTS  PLKAKGTSYI  NLVYSDDDGK  TWSEPQNINF  QVKKDWMKFL420
GIAPGRGIQI  KNGEHKGRII  VPVYYTNEKG  KQSSAVIYSD  DSGKNWTIGE  SPNDNRKLEN480
GKIINSKTLS  DDAPQLTECQ  VVEMPNGQLK  LFMRNLSGYL  NIATSFDGGA  TWDETVEKDT540
NVLEPYCQLS  VINYSQKVDG  KDAVIFSNPN  ARSRSNGTVR  IGLINQVGTY  ENGEPKYEFD600
WKYNKLVKPG  YYAYSCLTEL  SNGNIGLLYE  GTPSEEMSYI  EMNLKYLESG  ANK653

Predicted 3D structure by AlphaFold2 with pLDDT = 94.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM40(14-195)+GH33(213-640)

VNNSESLSSL  GEYKDINLES  SNASNITYDL  EKYKNLDEGT  IVVRFNSKDS  KIQSLLGISN60
SKTKNGYFNF  YVTNSRVGFE  LRNQKNEGNT  QSGTENLVHM  YKDVALNEGD  NTVALKIEKN120
KGYKLFLNGK  IIKEVKDTNT  KFLNNIENLD  SAFIGKTNRY  GQSNEYNFKG  NIGFMNIYNE180
PLGDDYLLSK  TGETKAKEEV  LVEGAVKTEP  MDLFHPGFLN  SSNYRIPALF  KTKEGTLIAS240
IDARRHGGAD  APNNDIDTAV  RRSEDGGKTW  DEGQIIMDYP  DKSSVIDTTL  IQDDETGRIF300
LLVTHFPSKY  GFWNAGLGSG  FKNIDGKEYL  CLYDSSGKEF  TVRENVVYDK  DGNKTEYTTN360
ALGDLFRNGT  KIDNINSSTS  PLKAKGTSYI  NLVYSDDDGK  TWSEPQNINF  QVKKDWMKFL420
GIAPGRGIQI  KNGEHKGRII  VPVYYTNEKG  KQSSAVIYSD  DSGKNWTIGE  SPNDNRKLEN480
GKIINSKTLS  DDAPQLTECQ  VVEMPNGQLK  LFMRNLSGYL  NIATSFDGGA  TWDETVEKDT540
NVLEPYCQLS  VINYSQKVDG  KDAVIFSNPN  ARSRSNGTVR  IGLINQVGTY  ENGEPKYEFD600
WKYNKLVKPG  YYAYSCLTEL  SNGNIGLLYE  GTPSEEMSYI  EMNLKYLESG  ANK653

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help