CAZyme3D

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Entry ID

Information for CAZyme ID: APR51410.1

Basic Information

GenBank IDAPR51410.1
FamilyCE12
Sequence Length291
UniProt IDA0A1L6J7A8(100,100)Download
Average pLDDT?92.04
CAZy50 ID147326
CAZy50 RepNo, AEL09254.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID93064
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas koreensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLAMALAV  LALPAAAQAQ  SEAQPALDKR  EKRTDAAPID  AFKVILVGDS  TMAPGSGWAS60
MFCAMHVKSS  IACLNLGRGG  RSTRSYRAEG  SWTIALNEAK  VAGYKKTWVL  IQFGHNDQST120
RAERWTDLNG  EFGANLRQMV  ADVRAAGAHP  VLVTPLTRRE  FRDGKLNNTL  AAWGDEARKV180
GAALQVPVID  LNARSAAAVQ  KLGAADSTAL  AQVPPLPEEL  EAARKGTTLK  PRPAEEARAP240
AVELPKTGPR  GQLRPKFDYT  HVGEAGARVF  AKMVAHDLAT  AAPELRSHLM  P291

Predicted 3D structure by AlphaFold2 with pLDDT = 92.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(43-278)

MKKLAMALAV  LALPAAAQAQ  SEAQPALDKR  EKRTDAAPID  AFKVILVGDS  TMAPGSGWAS60
MFCAMHVKSS  IACLNLGRGG  RSTRSYRAEG  SWTIALNEAK  VAGYKKTWVL  IQFGHNDQST120
RAERWTDLNG  EFGANLRQMV  ADVRAAGAHP  VLVTPLTRRE  FRDGKLNNTL  AAWGDEARKV180
GAALQVPVID  LNARSAAAVQ  KLGAADSTAL  AQVPPLPEEL  EAARKGTTLK  PRPAEEARAP240
AVELPKTGPR  GQLRPKFDYT  HVGEAGARVF  AKMVAHDLAT  AAPELRSHLM  P291

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help