CAZyme3D

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Entry ID

Information for CAZyme ID: APO43020.1

Basic Information

GenBank IDAPO43020.1
FamilyCE2
Sequence Length374
UniProt IDA0A1L5LI09(100,100)Download
Average pLDDT?97.12
CAZy50 ID102257
CAZy50 RepNo, AGA56307.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID528191
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus xylanexedens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGNEKMMTY  ALSDVHNLKV  HGRTTGELSP  LTLFWTGSAV  ELNVRGSELW  VEVESQYDMY60
ESWISILIND  VPVSRQMLMA  GRYWVCVFRG  MNADVVKNVR  IVKDVQAMSG  DPGCALQIHA120
VKSDGAFLPV  QEKPYKIEFI  GDSITSGEGA  IGAKAEEDWI  PMWFSAIHNY  TFMTAEALNA180
EYRVISQSGW  GVLTSWDNNP  KGNIPEYYEQ  VCGLLTGERN  EALGAGDQHD  FGSWQPDVVV240
VNLGSNDGGA  FQSPEWKDPD  TGKVYKQRLN  EDGTYHEEDL  TAFEKAVEQF  LFKLRKNNPD300
AQLVWAYGML  GFPMMPAIYR  AVDAYTKGTG  DRKVSIIQLP  DTTEETVGAR  THPGELSHRR360
TADVLAEYVR  GMLG374

Predicted 3D structure by AlphaFold2 with pLDDT = 97.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(136-369)

MKGNEKMMTY  ALSDVHNLKV  HGRTTGELSP  LTLFWTGSAV  ELNVRGSELW  VEVESQYDMY60
ESWISILIND  VPVSRQMLMA  GRYWVCVFRG  MNADVVKNVR  IVKDVQAMSG  DPGCALQIHA120
VKSDGAFLPV  QEKPYKIEFI  GDSITSGEGA  IGAKAEEDWI  PMWFSAIHNY  TFMTAEALNA180
EYRVISQSGW  GVLTSWDNNP  KGNIPEYYEQ  VCGLLTGERN  EALGAGDQHD  FGSWQPDVVV240
VNLGSNDGGA  FQSPEWKDPD  TGKVYKQRLN  EDGTYHEEDL  TAFEKAVEQF  LFKLRKNNPD300
AQLVWAYGML  GFPMMPAIYR  AVDAYTKGTG  DRKVSIIQLP  DTTEETVGAR  THPGELSHRR360
TADVLAEYVR  GMLG374

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help