CAZyme3D

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Entry ID

Information for CAZyme ID: APH61274.1

Basic Information

GenBank IDAPH61274.1
FamilyGT112
Sequence Length465
UniProt IDA0A1L3R9D4(100,100)Download
Average pLDDT?89.80
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID364410
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusGranulibacter
SpeciesGranulibacter bethesdensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTDTSSSVAQ  DTSASVPVSH  MPASSTGPAP  TEQPAPESKS  PYPAVADIPT  QEGPRGIRYD60
FNLGARIALP  EYQEKPFIVC  LRDIETGNIL  FLSSGPATFI  NSAKRFFVRF  RIEVWDSPDG120
GPASGKEPFF  VHDYDARDRD  ILIQFPVGTL  GDIMAWFPYA  ARFAEKHGCK  LTCALSELII180
PVLEKAYPHI  TFVTHDEMKE  KKLAETFYAT  YSLGLFFDDV  DCAWQPTDFR  FVGLHRTAGY240
ILGVDPEEEA  PRLALPDESR  PIPEPYVCIA  VQSSTQSKYW  NNPTGWRSVI  AELKRAGYRV300
ICIDQKAVHG  VGLVWNHIPN  GAEDETGNRP  LTERARWLRH  ADFFVGLSSG  LSWLAWAAGT360
PVVMISGFTH  PTNEFHTPYR  VHNWHTCNSC  WNDGSIRFDH  HDFMWCPRQK  DTPRQFECTR420
LISADYVIDK  IRTIPAFQKQ  LARMEASAAV  KKNETASHPK  KLQKV465

Predicted 3D structure by AlphaFold2 with pLDDT = 89.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(48-432)

MTDTSSSVAQ  DTSASVPVSH  MPASSTGPAP  TEQPAPESKS  PYPAVADIPT  QEGPRGIRYD60
FNLGARIALP  EYQEKPFIVC  LRDIETGNIL  FLSSGPATFI  NSAKRFFVRF  RIEVWDSPDG120
GPASGKEPFF  VHDYDARDRD  ILIQFPVGTL  GDIMAWFPYA  ARFAEKHGCK  LTCALSELII180
PVLEKAYPHI  TFVTHDEMKE  KKLAETFYAT  YSLGLFFDDV  DCAWQPTDFR  FVGLHRTAGY240
ILGVDPEEEA  PRLALPDESR  PIPEPYVCIA  VQSSTQSKYW  NNPTGWRSVI  AELKRAGYRV300
ICIDQKAVHG  VGLVWNHIPN  GAEDETGNRP  LTERARWLRH  ADFFVGLSSG  LSWLAWAAGT360
PVVMISGFTH  PTNEFHTPYR  VHNWHTCNSC  WNDGSIRFDH  HDFMWCPRQK  DTPRQFECTR420
LISADYVIDK  IRTIPAFQKQ  LARMEASAAV  KKNETASHPK  KLQKV465

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help