Information for CAZyme ID: APH61274.1
Basic Information
GenBank ID | APH61274.1 |
Family | GT112 |
Sequence Length | 465 |
UniProt ID | A0A1L3R9D4(100,100)![]() |
Average pLDDT? | 89.80 |
CAZy50 ID | 36924 |
CAZy50 Rep | No, BAM89986.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 364410 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Rhodospirillales |
Family | Acetobacteraceae |
Genus | Granulibacter |
Species | Granulibacter bethesdensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MTDTSSSVAQ DTSASVPVSH MPASSTGPAP TEQPAPESKS PYPAVADIPT QEGPRGIRYD | 60 |
FNLGARIALP EYQEKPFIVC LRDIETGNIL FLSSGPATFI NSAKRFFVRF RIEVWDSPDG | 120 |
GPASGKEPFF VHDYDARDRD ILIQFPVGTL GDIMAWFPYA ARFAEKHGCK LTCALSELII | 180 |
PVLEKAYPHI TFVTHDEMKE KKLAETFYAT YSLGLFFDDV DCAWQPTDFR FVGLHRTAGY | 240 |
ILGVDPEEEA PRLALPDESR PIPEPYVCIA VQSSTQSKYW NNPTGWRSVI AELKRAGYRV | 300 |
ICIDQKAVHG VGLVWNHIPN GAEDETGNRP LTERARWLRH ADFFVGLSSG LSWLAWAAGT | 360 |
PVVMISGFTH PTNEFHTPYR VHNWHTCNSC WNDGSIRFDH HDFMWCPRQK DTPRQFECTR | 420 |
LISADYVIDK IRTIPAFQKQ LARMEASAAV KKNETASHPK KLQKV | 465 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.80 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT112(48-432)
MTDTSSSVAQ DTSASVPVSH MPASSTGPAP TEQPAPESKS PYPAVADIPT QEGPRGIRYD | 60 |
FNLGARIALP EYQEKPFIVC LRDIETGNIL FLSSGPATFI NSAKRFFVRF RIEVWDSPDG | 120 |
GPASGKEPFF VHDYDARDRD ILIQFPVGTL GDIMAWFPYA ARFAEKHGCK LTCALSELII | 180 |
PVLEKAYPHI TFVTHDEMKE KKLAETFYAT YSLGLFFDDV DCAWQPTDFR FVGLHRTAGY | 240 |
ILGVDPEEEA PRLALPDESR PIPEPYVCIA VQSSTQSKYW NNPTGWRSVI AELKRAGYRV | 300 |
ICIDQKAVHG VGLVWNHIPN GAEDETGNRP LTERARWLRH ADFFVGLSSG LSWLAWAAGT | 360 |
PVVMISGFTH PTNEFHTPYR VHNWHTCNSC WNDGSIRFDH HDFMWCPRQK DTPRQFECTR | 420 |
LISADYVIDK IRTIPAFQKQ LARMEASAAV KKNETASHPK KLQKV | 465 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.