CAZyme3D

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Entry ID

Information for CAZyme ID: APE45576.1

Basic Information

GenBank IDAPE45576.1
FamilyGH102
Sequence Length344
UniProt IDA0A1J0WN49(100,100)Download
Average pLDDT?89.11
CAZy50 ID85751
CAZy50 RepNo, QPM91483.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1917485
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSulfitobacter
SpeciesSulfitobacter alexandrii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHAVLVSAWA  GVAAVTAAFA  NDVTYTVMDF  DQLDGWENDD  HASALETFLN  TCRDMDEVDW60
TAVCRFAQTD  PDPRQFFELF  FRPVLIEDGQ  DALFTGYFEP  ELDGDLYRSD  RFRYPVYQMP120
DEALAQNPWL  TRREILDGEV  LAGRGLEIAW  VDDPVELFFL  QIQGSGRIRL  PDGRYVRVGY180
RGANGHPYKS  IGVELVRRGV  YQPHQVSAQV  IKNWVRRNPE  DGRELLYHNP  SYVFFREISE240
VPADKGPLGA  MNRSVTAMRS  IAVDPSFVKL  GAPVWIEKDG  EKPLRRLMIA  QDTGSAIKGA300
QRADVFFGTG  DRAGLEAGKL  RDPGRMMVLM  PIQRAYALLP  ESAI344

Predicted 3D structure by AlphaFold2 with pLDDT = 89.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(103-236)

MHAVLVSAWA  GVAAVTAAFA  NDVTYTVMDF  DQLDGWENDD  HASALETFLN  TCRDMDEVDW60
TAVCRFAQTD  PDPRQFFELF  FRPVLIEDGQ  DALFTGYFEP  ELDGDLYRSD  RFRYPVYQMP120
DEALAQNPWL  TRREILDGEV  LAGRGLEIAW  VDDPVELFFL  QIQGSGRIRL  PDGRYVRVGY180
RGANGHPYKS  IGVELVRRGV  YQPHQVSAQV  IKNWVRRNPE  DGRELLYHNP  SYVFFREISE240
VPADKGPLGA  MNRSVTAMRS  IAVDPSFVKL  GAPVWIEKDG  EKPLRRLMIA  QDTGSAIKGA300
QRADVFFGTG  DRAGLEAGKL  RDPGRMMVLM  PIQRAYALLP  ESAI344

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help