CAZyme3D

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Entry ID

Information for CAZyme ID: APC42764.1

Basic Information

GenBank IDAPC42764.1
FamilyGH43_11
Sequence Length518
UniProt IDA0A1J0GN23(100,100)Download
Average pLDDT?96.95
CAZy50 ID60566
CAZy50 RepNo, WBL46941.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1552
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium estertheticum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKSIHNPILE  GFNPDPCILK  AKGIYYIVVS  TFEWLPGIRV  YESNDLVNWN  YCTSVLINKE60
LVNLQGNPTG  CSIWAPHISY  CEDTFYLVYT  DVKSTKVPFK  DVNNYLITSK  DIKGPWSNPI120
YLNSSGFDPS  LFHDENGEKW  LANEIWDYRL  NTHNKSAGII  IQKFDYEKKE  LIGKPYKIFD180
GTEYGKTEAP  QIYKHKEYYY  LLTAEGGTGE  GHMVTVVRSK  NITGPYELDP  KNPMLTSRDN240
HNLYLKCAGH  ASLVETDEHE  WYLAHLCTRP  IMGKYPILGR  ETALQKVIWS  KDGWLRLIQG300
GHSPATDVEL  PKSFNGIIKK  KDNKFFDDFD  KKNLNSEWST  LRIFPNSSWL  NKLSDKSIIR360
ITGAESPQST  FDQHIIAIRQ  SDINFSAETV  ITFNPTNHLQ  LAGMILYLDT  MNYIYLYLSY420
DEEKGIIVQV  MKAVKDDFSI  LPVKLPVTGK  KVKLYIKVNG  INAQFSVEDQ  ETKEFLVKED480
ISFLSGGYTG  NFIGLAVNNL  EKKNACFADF  DNFKYQPE518

Predicted 3D structure by AlphaFold2 with pLDDT = 96.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_11(4-295)+CBM91(327-517)

MKSIHNPILE  GFNPDPCILK  AKGIYYIVVS  TFEWLPGIRV  YESNDLVNWN  YCTSVLINKE60
LVNLQGNPTG  CSIWAPHISY  CEDTFYLVYT  DVKSTKVPFK  DVNNYLITSK  DIKGPWSNPI120
YLNSSGFDPS  LFHDENGEKW  LANEIWDYRL  NTHNKSAGII  IQKFDYEKKE  LIGKPYKIFD180
GTEYGKTEAP  QIYKHKEYYY  LLTAEGGTGE  GHMVTVVRSK  NITGPYELDP  KNPMLTSRDN240
HNLYLKCAGH  ASLVETDEHE  WYLAHLCTRP  IMGKYPILGR  ETALQKVIWS  KDGWLRLIQG300
GHSPATDVEL  PKSFNGIIKK  KDNKFFDDFD  KKNLNSEWST  LRIFPNSSWL  NKLSDKSIIR360
ITGAESPQST  FDQHIIAIRQ  SDINFSAETV  ITFNPTNHLQ  LAGMILYLDT  MNYIYLYLSY420
DEEKGIIVQV  MKAVKDDFSI  LPVKLPVTGK  KVKLYIKVNG  INAQFSVEDQ  ETKEFLVKED480
ISFLSGGYTG  NFIGLAVNNL  EKKNACFADF  DNFKYQPE518

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help