CAZyme3D

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Entry ID

Information for CAZyme ID: APA08821.1

Basic Information

GenBank IDAPA08821.1
FamilyCBM35, GH43_24
Sequence Length450
UniProt IDA0A1D9Q1J4(100,100)Download
Average pLDDT?95.35
CAZy50 ID61788
CAZy50 RepNo, WDK20756.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID665079
KingdomEukaryota
PhylumAscomycota
ClassLeotiomycetes
OrderHelotiales
FamilySclerotiniaceae
GenusSclerotinia
SpeciesSclerotinia sclerotiorum
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A1D9Q1J4.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLHTVFLLLS  IWSSYVLASL  QIISGATWTA  SGLNQHIQAH  GGGIIQVGST  YYWAGENKLN60
GSAFQSINCY  SSTDLVNWKF  NSYLLTLQSS  GDLGPNRVVE  RPHIMYNDAT  GKYVMWMHID120
SSNYGEARAG  VATSSSVCGS  YTYLGASQPL  GYQSRDLNVF  KDTDGTGYLL  TEDRANGLRI180
DKLSADYTSV  VSAVYLFADY  EAPAIYKSGD  TYFMFASHLS  GWSPNDNVYA  TATNLSGPWS240
AFSNFATVGS  NTYSSQTAAV  VNINGVVMYM  GDRWESSNLM  TSTYVWLPLT  ISGTKASMSN300
EVNWIIDPAA  GTWTTGPSEA  WLEADAATNI  LANGAKNITC  SGCSDGVRVG  YIGGPSPGGT360
LTIDGVSSSV  ATTTTIRIHH  LNGDSTQRYA  NVVVNGVSNI  IAFLPTADGN  TPGTSVLTTA420
LKSGAGNVIE  FESYNSGWAP  DIDRIMVPVS  450

Predicted 3D structure by AlphaFold2 with pLDDT = 95.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_24(44-275)+CBM35(350-447)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help