CAZyme3D

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Entry ID

Information for CAZyme ID: AOW46539.1

Basic Information

GenBank IDAOW46539.1
FamilyGT4
Sequence Length353
UniProt IDA0A1D8QW41(100,100)Download
Average pLDDT?93.62
CAZy50 ID71059
CAZy50 RepNo, CEF42238.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID481146
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusAcetobacter
SpeciesAcetobacter ascendens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMDGTAHRKT  TQPLKVAHIM  AGAPTGGAEL  FFERLCIAQA  AAGLSVLPII  RTNPERAQRL60
HAGSLAPVEL  PFGNMLDIRT  RMGLRSALKE  FSPRVAVAWM  NRAARFTPQG  NWVLAGRLGG120
FYDLSYYRRC  SHLIGNTHGL  VRWMREQGWP  ANAVHYLPNF  ATDLAATPPV  WPDFLQHGTP180
FLLALGRLHK  NKAFDVLIRA  MKHVPHIPLV  IAGEGPERAA  LEALAQQEGV  AERIFMPGWA240
NQPGGLLRAC  SVMICPSRHE  PLGNVVIEGF  SACKPVIATA  SQGPSELIRN  GENGLLAPVE300
DANTLAAQIC  TALETPELAA  RMAQAGRRDY  ETTYAVSPVL  DAWHKFLSTV  EAG353

Predicted 3D structure by AlphaFold2 with pLDDT = 93.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(177-323)

MMDGTAHRKT  TQPLKVAHIM  AGAPTGGAEL  FFERLCIAQA  AAGLSVLPII  RTNPERAQRL60
HAGSLAPVEL  PFGNMLDIRT  RMGLRSALKE  FSPRVAVAWM  NRAARFTPQG  NWVLAGRLGG120
FYDLSYYRRC  SHLIGNTHGL  VRWMREQGWP  ANAVHYLPNF  ATDLAATPPV  WPDFLQHGTP180
FLLALGRLHK  NKAFDVLIRA  MKHVPHIPLV  IAGEGPERAA  LEALAQQEGV  AERIFMPGWA240
NQPGGLLRAC  SVMICPSRHE  PLGNVVIEGF  SACKPVIATA  SQGPSELIRN  GENGLLAPVE300
DANTLAAQIC  TALETPELAA  RMAQAGRRDY  ETTYAVSPVL  DAWHKFLSTV  EAG353

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help