CAZyme3D

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Entry ID

Information for CAZyme ID: AOR27927.1

Basic Information

GenBank IDAOR27927.1
FamilyGH5_42
Sequence Length504
UniProt IDA0A1D7XX62(100,100)Download
Average pLDDT?92.42
CAZy50 ID65871
CAZy50 RepNo, QKX03962.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1336794
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFormosa
SpeciesFormosa sp. Hel1_33_131

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVNTNKIILR  SVLIISYLVI  ISILIFLISS  LFSYFNTGAD  RSSMLHTEVK  KIDQYTPKIS60
WKDDGNEGRY  MDPQTLSSIE  NDYLDAWYVK  HIANKTNLKN  GIDDFYTKSA  RKNLFNFIEH120
NKEENIAIES  TTLAHNPDIL  FFSEDGQLLV  LEDKNVIEYK  KFIKDNAFVI  ETTETSDYKG180
LFLLEDGFWR  IRHLVKERTS  EFDKTTLPSL  LGSSNIKGIN  YYPQATPWDM  FGENFDLTII240
EKDFEIIMKA  GLNTIRIFVP  YKDFGKAKVK  EPKLNKLKQV  LDAAEKSNLK  VVVTLFDFYG300
DYDVLDWTLN  HRHAEIIVSK  FKDHKAILAW  DVKNEPNLDF  ESRGKELVIS  WLEHLIILIK360
SIDKNHAVTI  GWSNIKSAEI  LKDNLDFVSF  HYYEDVHEFE  EKYEFLKKLI  PNKPIVLGEF420
GVSSYSGAWK  PFGNSEKIQA  GYYKEMQKIL  TKKNLSFMSW  TLYDFDTIPK  EVVGVLPWRV480
NPQKEFGFIN  SKGVKKPAFE  YISK504

Predicted 3D structure by AlphaFold2 with pLDDT = 92.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_42(216-469)

MVNTNKIILR  SVLIISYLVI  ISILIFLISS  LFSYFNTGAD  RSSMLHTEVK  KIDQYTPKIS60
WKDDGNEGRY  MDPQTLSSIE  NDYLDAWYVK  HIANKTNLKN  GIDDFYTKSA  RKNLFNFIEH120
NKEENIAIES  TTLAHNPDIL  FFSEDGQLLV  LEDKNVIEYK  KFIKDNAFVI  ETTETSDYKG180
LFLLEDGFWR  IRHLVKERTS  EFDKTTLPSL  LGSSNIKGIN  YYPQATPWDM  FGENFDLTII240
EKDFEIIMKA  GLNTIRIFVP  YKDFGKAKVK  EPKLNKLKQV  LDAAEKSNLK  VVVTLFDFYG300
DYDVLDWTLN  HRHAEIIVSK  FKDHKAILAW  DVKNEPNLDF  ESRGKELVIS  WLEHLIILIK360
SIDKNHAVTI  GWSNIKSAEI  LKDNLDFVSF  HYYEDVHEFE  EKYEFLKKLI  PNKPIVLGEF420
GVSSYSGAWK  PFGNSEKIQA  GYYKEMQKIL  TKKNLSFMSW  TLYDFDTIPK  EVVGVLPWRV480
NPQKEFGFIN  SKGVKKPAFE  YISK504

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help