CAZyme3D

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Entry ID

Information for CAZyme ID: AOL95614.1

Basic Information

GenBank IDAOL95614.1
FamilyGH13
Sequence Length621
UniProt IDA0A1D7NPB0(100,100)Download
Average pLDDT?93.18
CAZy50 ID37751
CAZy50 RepNo, WBO20700.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1896196
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPorphyrobacter
SpeciesPorphyrobacter sp. LM 6

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRIFVRLAA  ALCAGTAIAG  TAIAGGPAMP  AAPQPQAAPA  PIAERQLEDE  IIYFVLPDRF60
ENGDTANDRG  GIKGGAFDHG  FDPKHKGFYH  GGDLKGLTAR  LDYIQGMGVT  AIWFAPIFKN120
KPVQGKPGEE  SAGYHGYWVT  DFTSVDPHFG  TNDEFKAFVS  AAHARGMKVY  MDIITNHTAD180
VIGYKEGEKT  GYAYRSKGDY  PFSRAGGPKG  KPINPGFEGD  ENPDPANWAK  LTDPSFAYTP240
QVTEAERNVK  VPAWLNDVTL  YHNRGNSHWI  GESSVYGDFS  GLDDLATEHP  RVVAGMIDIF300
GSWIDNYGID  GFRIDTAKHV  NPEFWQAFVP  AMQARAKAKG  IDHFHIFGEI  AYEEPTATIA360
AQVMAQSHLP  YALDMGFAKA  AQLVASGKAG  PRLMAEFLAQ  DAIYPGGPQT  ALGLPTFLGN420
HDFGRFSMYV  RQMSGSDDEA  TLLARVKLGH  AMMFLLRGVP  TVYYGDEQGF  ISDGNDQLAR480
EDMFPSVTAA  YNDNNLIGSD  ATTAQSNFDP  SHPLYRLIGD  LARARSASPA  LRRGLSTVRA540
FAETAPGLLA  VERFDPASGQ  RVLVMFNTGA  SALSQNVEVS  YRASAITPLA  GSCPAALVAP600
GAVHATLPPF  GFAACILESE  K621

Predicted 3D structure by AlphaFold2 with pLDDT = 93.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13(80-474)

MTRIFVRLAA  ALCAGTAIAG  TAIAGGPAMP  AAPQPQAAPA  PIAERQLEDE  IIYFVLPDRF60
ENGDTANDRG  GIKGGAFDHG  FDPKHKGFYH  GGDLKGLTAR  LDYIQGMGVT  AIWFAPIFKN120
KPVQGKPGEE  SAGYHGYWVT  DFTSVDPHFG  TNDEFKAFVS  AAHARGMKVY  MDIITNHTAD180
VIGYKEGEKT  GYAYRSKGDY  PFSRAGGPKG  KPINPGFEGD  ENPDPANWAK  LTDPSFAYTP240
QVTEAERNVK  VPAWLNDVTL  YHNRGNSHWI  GESSVYGDFS  GLDDLATEHP  RVVAGMIDIF300
GSWIDNYGID  GFRIDTAKHV  NPEFWQAFVP  AMQARAKAKG  IDHFHIFGEI  AYEEPTATIA360
AQVMAQSHLP  YALDMGFAKA  AQLVASGKAG  PRLMAEFLAQ  DAIYPGGPQT  ALGLPTFLGN420
HDFGRFSMYV  RQMSGSDDEA  TLLARVKLGH  AMMFLLRGVP  TVYYGDEQGF  ISDGNDQLAR480
EDMFPSVTAA  YNDNNLIGSD  ATTAQSNFDP  SHPLYRLIGD  LARARSASPA  LRRGLSTVRA540
FAETAPGLLA  VERFDPASGQ  RVLVMFNTGA  SALSQNVEVS  YRASAITPLA  GSCPAALVAP600
GAVHATLPPF  GFAACILESE  K621

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help