Information for CAZyme ID: AOL95614.1
Basic Information
GenBank ID | AOL95614.1 |
Family | GH13 |
Sequence Length | 621 |
UniProt ID | A0A1D7NPB0(100,100)![]() |
Average pLDDT? | 93.18 |
CAZy50 ID | 37751 |
CAZy50 Rep | No, WBO20700.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1896196 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Sphingomonadales |
Family | Erythrobacteraceae |
Genus | Porphyrobacter |
Species | Porphyrobacter sp. LM 6 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MTRIFVRLAA ALCAGTAIAG TAIAGGPAMP AAPQPQAAPA PIAERQLEDE IIYFVLPDRF | 60 |
ENGDTANDRG GIKGGAFDHG FDPKHKGFYH GGDLKGLTAR LDYIQGMGVT AIWFAPIFKN | 120 |
KPVQGKPGEE SAGYHGYWVT DFTSVDPHFG TNDEFKAFVS AAHARGMKVY MDIITNHTAD | 180 |
VIGYKEGEKT GYAYRSKGDY PFSRAGGPKG KPINPGFEGD ENPDPANWAK LTDPSFAYTP | 240 |
QVTEAERNVK VPAWLNDVTL YHNRGNSHWI GESSVYGDFS GLDDLATEHP RVVAGMIDIF | 300 |
GSWIDNYGID GFRIDTAKHV NPEFWQAFVP AMQARAKAKG IDHFHIFGEI AYEEPTATIA | 360 |
AQVMAQSHLP YALDMGFAKA AQLVASGKAG PRLMAEFLAQ DAIYPGGPQT ALGLPTFLGN | 420 |
HDFGRFSMYV RQMSGSDDEA TLLARVKLGH AMMFLLRGVP TVYYGDEQGF ISDGNDQLAR | 480 |
EDMFPSVTAA YNDNNLIGSD ATTAQSNFDP SHPLYRLIGD LARARSASPA LRRGLSTVRA | 540 |
FAETAPGLLA VERFDPASGQ RVLVMFNTGA SALSQNVEVS YRASAITPLA GSCPAALVAP | 600 |
GAVHATLPPF GFAACILESE K | 621 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.18 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH13(80-474)
MTRIFVRLAA ALCAGTAIAG TAIAGGPAMP AAPQPQAAPA PIAERQLEDE IIYFVLPDRF | 60 |
ENGDTANDRG GIKGGAFDHG FDPKHKGFYH GGDLKGLTAR LDYIQGMGVT AIWFAPIFKN | 120 |
KPVQGKPGEE SAGYHGYWVT DFTSVDPHFG TNDEFKAFVS AAHARGMKVY MDIITNHTAD | 180 |
VIGYKEGEKT GYAYRSKGDY PFSRAGGPKG KPINPGFEGD ENPDPANWAK LTDPSFAYTP | 240 |
QVTEAERNVK VPAWLNDVTL YHNRGNSHWI GESSVYGDFS GLDDLATEHP RVVAGMIDIF | 300 |
GSWIDNYGID GFRIDTAKHV NPEFWQAFVP AMQARAKAKG IDHFHIFGEI AYEEPTATIA | 360 |
AQVMAQSHLP YALDMGFAKA AQLVASGKAG PRLMAEFLAQ DAIYPGGPQT ALGLPTFLGN | 420 |
HDFGRFSMYV RQMSGSDDEA TLLARVKLGH AMMFLLRGVP TVYYGDEQGF ISDGNDQLAR | 480 |
EDMFPSVTAA YNDNNLIGSD ATTAQSNFDP SHPLYRLIGD LARARSASPA LRRGLSTVRA | 540 |
FAETAPGLLA VERFDPASGQ RVLVMFNTGA SALSQNVEVS YRASAITPLA GSCPAALVAP | 600 |
GAVHATLPPF GFAACILESE K | 621 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.