CAZyme3D

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Entry ID

Information for CAZyme ID: AOI49584.1

Basic Information

GenBank IDAOI49584.1
FamilyAA10
Sequence Length366
UniProt IDA0A7U4UUK4(100,100)Download
Average pLDDT?87.29
CAZy50 ID62525
CAZy50 RepNo, QAU24056.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID441162
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia oklahomensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKSLFDAPSS  RHRARRAATL  GAAATLAASL  AALFAPVDDA  AAHGAVGFPI  ARQYQCRLEG60
GYWDPPDGSG  IPNDDCRAAY  RTGNNSAYPF  TQWNEVSANP  VGQGNDLGQL  KAAVPDGLLC120
AGGDTSKAGL  DKAPATVWRK  TRLTPRNGHV  ELVWENTTSH  NPARMRVFIS  KPSYDPARPL180
RWDDLQQIYD  APAPAPVPAN  GASHLPGSIQ  SFYKLDVTLP  AGRAGDAVLY  SYWQRIDAGN240
EGFFNCSDVT  IAADESTSGF  PWIATRAFIE  PGVAPQAGQQ  VRFRVMGTDA  RGAEVVDVRQ300
PITPYNVDRS  VWAKQIADQV  NGRYGSVARI  GVRSGNTIYF  DATNLRANKI  WLQPNYSSAL360
GVVGAK366

Predicted 3D structure by AlphaFold2 with pLDDT = 87.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(43-249)

MKSLFDAPSS  RHRARRAATL  GAAATLAASL  AALFAPVDDA  AAHGAVGFPI  ARQYQCRLEG60
GYWDPPDGSG  IPNDDCRAAY  RTGNNSAYPF  TQWNEVSANP  VGQGNDLGQL  KAAVPDGLLC120
AGGDTSKAGL  DKAPATVWRK  TRLTPRNGHV  ELVWENTTSH  NPARMRVFIS  KPSYDPARPL180
RWDDLQQIYD  APAPAPVPAN  GASHLPGSIQ  SFYKLDVTLP  AGRAGDAVLY  SYWQRIDAGN240
EGFFNCSDVT  IAADESTSGF  PWIATRAFIE  PGVAPQAGQQ  VRFRVMGTDA  RGAEVVDVRQ300
PITPYNVDRS  VWAKQIADQV  NGRYGSVARI  GVRSGNTIYF  DATNLRANKI  WLQPNYSSAL360
GVVGAK366

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help