CAZyme3D

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Entry ID

Information for CAZyme ID: AOI48024.1

Basic Information

GenBank IDAOI48024.1
FamilyCBM20, GH15
Sequence Length881
UniProt IDA0A7U4URM4(100,100)Download
Average pLDDT?93.80
CAZy50 ID19318
CAZy50 RepNo, AUX32943.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID441162
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia oklahomensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSAKHFRLKQ  AVLVGSLAAM  AGVAALPACA  SAAEAFGSPG  ATPVRGPAAK  SFLGTAVNGA60
SRVYFTGYRG  ILSEVYYPVL  DTPESVDLQF  LVGDGGKTFV  DEEKLQAYSA  AQTDTRTMSW120
QVTTSNSAHN  WQIRKIVFAD  PNYNAIVQRV  TFTALNGHKV  GDFNLYMLSK  PYLDNAGGNN180
TAQTVSGTGG  TALVANHNSR  YSALVTSRPW  TVVNGVGMTS  NGFVGQSDGW  TDLLGGTADK240
TMDWTFSSAT  NGNVAQMGWI  DLGDPTATSV  SFDVVLGFGG  TQDQALGDAN  TVLGSDLAGE300
QQQYDTAWHN  YAAGLSSQNG  AADDAYYLAA  MTLKTMQDKS  NGAMIAGIGT  PWGETQGDAN360
AGGYHLVWPR  DLFKFANALT  TAGDTSSATS  VVNYLFNTLQ  QTSDCGTAEY  NASGCAQGYS420
RVGRFPQNAW  VSGWPYWQGT  QMDEQAMPII  LAWRLGPSVF  NPLWPKIKLT  ADYIVNTGPW480
TYQERWEENA  GYSPSTIAAE  IAGLVTAADI  ATQNGDTASA  ARYLAAADYW  QENVAAWTYT540
STGTFGSGSY  YIRINPASRS  GTGTDRASFA  PTAGPDTPQT  LTVKNGGGSH  DARRVVDGGF600
FELVRMGVKR  ATDPTVVNTI  SVYDSVLGQS  LSLANAPALS  PNAWFRYNFD  GYGEHNDGSD660
FDGTGAGRLW  PIFTAERGMY  EIARQGSGSA  GSAYFSTLKQ  LTTPEGFLPE  QVWSNSTTLP720
DGWAVTTPAG  YTPGQPTKSM  APLNWAMGEY  ISLLASIQAG  RIVDIPSVVC  ARYNNCVAPL780
QSGQVAVAVN  VNASTQLGQQ  VYVTGNVAAL  GNWNTDLGIP  VDPANYPVWS  NTVNMPAGQA840
IQYKYYRKNA  DGSVTWENWS  GNRQLQTPTS  GALTLNDQVN  W881

Predicted 3D structure by AlphaFold2 with pLDDT = 93.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH15(329-753)+CBM20(785-872)

MSAKHFRLKQ  AVLVGSLAAM  AGVAALPACA  SAAEAFGSPG  ATPVRGPAAK  SFLGTAVNGA60
SRVYFTGYRG  ILSEVYYPVL  DTPESVDLQF  LVGDGGKTFV  DEEKLQAYSA  AQTDTRTMSW120
QVTTSNSAHN  WQIRKIVFAD  PNYNAIVQRV  TFTALNGHKV  GDFNLYMLSK  PYLDNAGGNN180
TAQTVSGTGG  TALVANHNSR  YSALVTSRPW  TVVNGVGMTS  NGFVGQSDGW  TDLLGGTADK240
TMDWTFSSAT  NGNVAQMGWI  DLGDPTATSV  SFDVVLGFGG  TQDQALGDAN  TVLGSDLAGE300
QQQYDTAWHN  YAAGLSSQNG  AADDAYYLAA  MTLKTMQDKS  NGAMIAGIGT  PWGETQGDAN360
AGGYHLVWPR  DLFKFANALT  TAGDTSSATS  VVNYLFNTLQ  QTSDCGTAEY  NASGCAQGYS420
RVGRFPQNAW  VSGWPYWQGT  QMDEQAMPII  LAWRLGPSVF  NPLWPKIKLT  ADYIVNTGPW480
TYQERWEENA  GYSPSTIAAE  IAGLVTAADI  ATQNGDTASA  ARYLAAADYW  QENVAAWTYT540
STGTFGSGSY  YIRINPASRS  GTGTDRASFA  PTAGPDTPQT  LTVKNGGGSH  DARRVVDGGF600
FELVRMGVKR  ATDPTVVNTI  SVYDSVLGQS  LSLANAPALS  PNAWFRYNFD  GYGEHNDGSD660
FDGTGAGRLW  PIFTAERGMY  EIARQGSGSA  GSAYFSTLKQ  LTTPEGFLPE  QVWSNSTTLP720
DGWAVTTPAG  YTPGQPTKSM  APLNWAMGEY  ISLLASIQAG  RIVDIPSVVC  ARYNNCVAPL780
QSGQVAVAVN  VNASTQLGQQ  VYVTGNVAAL  GNWNTDLGIP  VDPANYPVWS  NTVNMPAGQA840
IQYKYYRKNA  DGSVTWENWS  GNRQLQTPTS  GALTLNDQVN  W881

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help