CAZyme3D

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Entry ID

Information for CAZyme ID: ANU78342.1

Basic Information

GenBank IDANU78342.1
FamilyGH88
Sequence Length379
UniProt IDA0A1C7IJP2(100,100)Download
Average pLDDT?97.15
CAZy50 ID96777
CAZy50 RepNo, QQR00446.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1796616
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusBlautia
SpeciesBlautia pseudococcoides

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQKFLSEADC  KWLEETFAKF  HLKMEKECER  LGDKIPYIPQ  NGYYEEDLGE  RDIAWWTNGF60
WGGILWQMYH  ATGKEIYRRK  AENVEKRLDR  SMEEYEGLYH  DVGFMWMHTA  VADYRLTGSH120
ESYIRGQHAA  NLLAGRFNVL  GNFIRAWNDD  KAGWMIIDCL  MNLSLLYWAS  EESKDPRFEA180
VARKHADTAM  EKILRPDGSC  NHIAILDPLT  GELLEAPAGQ  GYGEGSSWSR  GQSWAVYGFA240
ISYAHTREQK  YLDAAKQTAH  YFIANVSLTD  YLPLCDFRAP  KEPLYYDSTA  GACAACGLLE300
IAKHVPENEK  SLYEKSALRI  LRAMEEHFCN  WNPNEDGVLG  MGKVAYHDEG  ENLQVPIIYG360
DYFFIEAVLR  LMGKDFWIW379

Predicted 3D structure by AlphaFold2 with pLDDT = 97.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(50-371)

MQKFLSEADC  KWLEETFAKF  HLKMEKECER  LGDKIPYIPQ  NGYYEEDLGE  RDIAWWTNGF60
WGGILWQMYH  ATGKEIYRRK  AENVEKRLDR  SMEEYEGLYH  DVGFMWMHTA  VADYRLTGSH120
ESYIRGQHAA  NLLAGRFNVL  GNFIRAWNDD  KAGWMIIDCL  MNLSLLYWAS  EESKDPRFEA180
VARKHADTAM  EKILRPDGSC  NHIAILDPLT  GELLEAPAGQ  GYGEGSSWSR  GQSWAVYGFA240
ISYAHTREQK  YLDAAKQTAH  YFIANVSLTD  YLPLCDFRAP  KEPLYYDSTA  GACAACGLLE300
IAKHVPENEK  SLYEKSALRI  LRAMEEHFCN  WNPNEDGVLG  MGKVAYHDEG  ENLQVPIIYG360
DYFFIEAVLR  LMGKDFWIW379

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help