CAZyme3D

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Entry ID

Information for CAZyme ID: ANP48046.1

Basic Information

GenBank IDANP48046.1
FamilyPL10_2
Sequence Length547
UniProt IDA0A1B1ANC5(100,100)Download
Average pLDDT?89.65
CAZy50 ID56696
CAZy50 RepNo, AAK24010.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1759059
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomonadales
FamilyHyphomonadaceae
GenusCandidatus Viadribacter
SpeciesCandidatus Viadribacter manganicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTASRRALL  AGVSGAVLTS  GCASFFSSAP  DTGDNELKRE  TRAAMKRAAR  FMRERVAYRG60
GYVWSYAPDF  SRRWGEMEAF  PSMIWIQPPG  TATVGHLFLD  CFHATRDEFY  YQAAMDVAEG120
LIAAQHPAGG  WNYHHDFAGE  ESTRRWYDTI  GKNGWRLEEF  HHYYGNATFD  DAGTSEASQF180
LLRMYVERRS  SRLRAPVEKA  LRFVLDSQYV  NGGWPQRFPL  TDEGGLHGHA  DYTRQITFND240
DVAGENIKFL  LMVYQTLGDE  RALGAIRRAM  DVFVATQQPA  PQAGWGLQHD  ARTLAPIGAR300
TYEPDALTTH  TTANNISQMM  NFFEWTGERR  FIERVPEAIA  WLDSVRLRDD  QVRVAGRHYP360
TFVEVGSNRA  RIVHRRGSNV  VNGEYYWNYD  DAKPITHYSQ  WRNVDVEALR  TRHALLTQAV420
QIQPRSPFER  RADFRLPRYF  TTQNIEVSDL  NSNVGSGAVQ  RPTSQRVQEL  ISALNAEGYW480
PTALTATSNP  YAGDGSTTPA  LGDFSQTLVG  DATDTSPHTT  DQPITGISTG  AFIQNMSALL540
LSLDSGE547

Predicted 3D structure by AlphaFold2 with pLDDT = 89.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_2(125-399)

MRTASRRALL  AGVSGAVLTS  GCASFFSSAP  DTGDNELKRE  TRAAMKRAAR  FMRERVAYRG60
GYVWSYAPDF  SRRWGEMEAF  PSMIWIQPPG  TATVGHLFLD  CFHATRDEFY  YQAAMDVAEG120
LIAAQHPAGG  WNYHHDFAGE  ESTRRWYDTI  GKNGWRLEEF  HHYYGNATFD  DAGTSEASQF180
LLRMYVERRS  SRLRAPVEKA  LRFVLDSQYV  NGGWPQRFPL  TDEGGLHGHA  DYTRQITFND240
DVAGENIKFL  LMVYQTLGDE  RALGAIRRAM  DVFVATQQPA  PQAGWGLQHD  ARTLAPIGAR300
TYEPDALTTH  TTANNISQMM  NFFEWTGERR  FIERVPEAIA  WLDSVRLRDD  QVRVAGRHYP360
TFVEVGSNRA  RIVHRRGSNV  VNGEYYWNYD  DAKPITHYSQ  WRNVDVEALR  TRHALLTQAV420
QIQPRSPFER  RADFRLPRYF  TTQNIEVSDL  NSNVGSGAVQ  RPTSQRVQEL  ISALNAEGYW480
PTALTATSNP  YAGDGSTTPA  LGDFSQTLVG  DATDTSPHTT  DQPITGISTG  AFIQNMSALL540
LSLDSGE547

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help