CAZyme3D

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Entry ID

Information for CAZyme ID: ANI29480.1

Basic Information

GenBank IDANI29480.1
FamilyCBM34, GH13_21
Sequence Length358
UniProt IDA0A3S6EZX6(100,100)Download
Average pLDDT?89.13
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID935293
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia entomophaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSGWHLPVP  PYIHLRDDTL  HISLWLQGDD  LPEQVFLRCE  PDNEEWLLTM  KGRDHDGFRR60
YRGTLPLREG  QPTRRYCFKL  LWADRQQWFS  PLGFSVVPPA  QLAQFAVDVP  DSGPDWVADQ120
IFYQIFPDRF  ASSQGSHCVQ  NGSYFHYAAD  CPVARREWDE  PLEDIHASST  FYGGDLAGIC180
QKLPYLQNLG  VTALYLNPIF  TAPSVHKYDT  QDYYQVDPYL  GGNEAFLQLR  EKTHSAGIKL240
VLDGVFNHTG  DSHIWFDRHQ  QGTGGACHDV  ESVYRDWFNF  YPDGQALDWK  GNRSLPKLNF300
AADGVVNQIY  QADDSVVRHW  LRPPYSIDGW  RLDVVHMLGE  QGGGQGESAP  FSGNLSGG358

Predicted 3D structure by AlphaFold2 with pLDDT = 89.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(5-110)+GH13_21(174-345)

MLSGWHLPVP  PYIHLRDDTL  HISLWLQGDD  LPEQVFLRCE  PDNEEWLLTM  KGRDHDGFRR60
YRGTLPLREG  QPTRRYCFKL  LWADRQQWFS  PLGFSVVPPA  QLAQFAVDVP  DSGPDWVADQ120
IFYQIFPDRF  ASSQGSHCVQ  NGSYFHYAAD  CPVARREWDE  PLEDIHASST  FYGGDLAGIC180
QKLPYLQNLG  VTALYLNPIF  TAPSVHKYDT  QDYYQVDPYL  GGNEAFLQLR  EKTHSAGIKL240
VLDGVFNHTG  DSHIWFDRHQ  QGTGGACHDV  ESVYRDWFNF  YPDGQALDWK  GNRSLPKLNF300
AADGVVNQIY  QADDSVVRHW  LRPPYSIDGW  RLDVVHMLGE  QGGGQGESAP  FSGNLSGG358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help