CAZyme3D

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Entry ID

Information for CAZyme ID: ANH80307.1

Basic Information

GenBank IDANH80307.1
FamilyGH125
Sequence Length473
UniProt IDA0A1A9HY41(100,100)Download
Average pLDDT?94.51
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1176587
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusNiabella
SpeciesNiabella ginsenosidivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRKTFLQHT  GVLGAGLALN  NFSFAKGKID  FPIVRVPEGQ  RRFKSAAIEG  AIKAFQSKVA60
NKELGWLFNN  CFPNTLDTTV  FYTEQNGVPD  TYVITGDIDA  MWLRDSSAQV  YPYLQFTGQD120
QALHQLIAGV  IRKQTHFILK  DPYANAFYND  DSKVSEWKET  DNTDMKPGIH  ERKWEIDSLC180
YPIRLAYRFW  KETGDTSPFD  AKWKEGIALT  LKTFKEQQRK  ENEGPYHFQR  KTSWATDGIP240
MGGYGYPVKP  VGLICSMFRP  SDDATIFAYL  VPSNLFAVVS  LKQAAEMISK  ITKDAALAGE300
LTGLAAEVET  AVKKYAITTH  PEFGKLYAYE  VNAYGSHVLM  DDANVPSLLG  LPYLGAVSNT360
DPLYKATRKY  IWSQENPFFF  KGSAAEGIGG  PHIGKDMIWP  MSITMKALTS  NDDKEIRWCI420
DTLQKTHGGT  GFMHESFHKD  DPQKFTRKWF  AWSNTLFGEL  LWKTFKERPG  LLG473

Predicted 3D structure by AlphaFold2 with pLDDT = 94.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(62-461)

MNRKTFLQHT  GVLGAGLALN  NFSFAKGKID  FPIVRVPEGQ  RRFKSAAIEG  AIKAFQSKVA60
NKELGWLFNN  CFPNTLDTTV  FYTEQNGVPD  TYVITGDIDA  MWLRDSSAQV  YPYLQFTGQD120
QALHQLIAGV  IRKQTHFILK  DPYANAFYND  DSKVSEWKET  DNTDMKPGIH  ERKWEIDSLC180
YPIRLAYRFW  KETGDTSPFD  AKWKEGIALT  LKTFKEQQRK  ENEGPYHFQR  KTSWATDGIP240
MGGYGYPVKP  VGLICSMFRP  SDDATIFAYL  VPSNLFAVVS  LKQAAEMISK  ITKDAALAGE300
LTGLAAEVET  AVKKYAITTH  PEFGKLYAYE  VNAYGSHVLM  DDANVPSLLG  LPYLGAVSNT360
DPLYKATRKY  IWSQENPFFF  KGSAAEGIGG  PHIGKDMIWP  MSITMKALTS  NDDKEIRWCI420
DTLQKTHGGT  GFMHESFHKD  DPQKFTRKWF  AWSNTLFGEL  LWKTFKERPG  LLG473

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help