CAZyme3D

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Entry ID

Information for CAZyme ID: AMY52593.1

Basic Information

GenBank IDAMY52593.1
FamilyGT4
Sequence Length364
UniProt IDA0A165LDF0(100,100)Download
Average pLDDT?92.10
CAZy50 ID123456
CAZy50 RepNo, QII08108.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1051973
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus fascians

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVLFDGYYW  FDGPPAGIVI  THEKIAAWRR  EFPGDVVTVA  LRRSPTPAEA  ADLERQGVRW60
IRTYLPTQPL  KNMVELSLRV  RLGSYDMAWG  SNYSPLLGKS  AVFVHDALFQ  SNPEWFTTIE120
RIYLSPIMIA  ARAATVLFVS  SRTEAARIVE  HNPRLTPTAV  TGFGISHALL  DAHPQPPSAF180
DLRPGSFVLS  VGRLNTRKNL  ATTLSAAVRS  GAISPNRPFV  VVGPANGKAD  QLEQEVLAAI240
DDGSIRYTGF  VETEQLAWLY  RNTALFVYLS  LNEGYGLPPL  EALRLGAPVL  VSDRPIFREL300
LGESVRYCDP  TDMDAVAQAM  TIGLSSGPRP  LPSGFEFPSW  EHMVHTMRVA  MADPKGVSRR360
RSTS364

Predicted 3D structure by AlphaFold2 with pLDDT = 92.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(186-321)

MRVLFDGYYW  FDGPPAGIVI  THEKIAAWRR  EFPGDVVTVA  LRRSPTPAEA  ADLERQGVRW60
IRTYLPTQPL  KNMVELSLRV  RLGSYDMAWG  SNYSPLLGKS  AVFVHDALFQ  SNPEWFTTIE120
RIYLSPIMIA  ARAATVLFVS  SRTEAARIVE  HNPRLTPTAV  TGFGISHALL  DAHPQPPSAF180
DLRPGSFVLS  VGRLNTRKNL  ATTLSAAVRS  GAISPNRPFV  VVGPANGKAD  QLEQEVLAAI240
DDGSIRYTGF  VETEQLAWLY  RNTALFVYLS  LNEGYGLPPL  EALRLGAPVL  VSDRPIFREL300
LGESVRYCDP  TDMDAVAQAM  TIGLSSGPRP  LPSGFEFPSW  EHMVHTMRVA  MADPKGVSRR360
RSTS364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help