CAZyme3D

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Entry ID

Information for CAZyme ID: AMY52538.1

Basic Information

GenBank IDAMY52538.1
FamilyGT87
Sequence Length442
UniProt IDA0A165LCM2(100,100)Download
Average pLDDT?87.31
CAZy50 ID82104
CAZy50 RepNo, QII03127.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1051973
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus fascians

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTSSFRPLY  ARSDSDVRVE  NGQETAIRET  QPEVHATGVG  RLGWRWFLAS  AIAACVAVVA60
HAYFLGWSTP  FGLFGNGIDT  IVYRHGAYVV  QHGEPLYEFA  LFDIGLPFTY  PPFAALAFAP120
LALLSVTSAV  AVVQAINLLL  IYVAVVASWR  ALGYRSATMY  LVSVGLAVAL  TWLEPVRMTI180
WLGQINMLLL  VLVLLDLTRG  EGSRVRGVGV  GIAAGLKLTP  AFFVLHLLAQ  RQWRAAVTAI240
AAFTVTVLAG  LLVIPADSWK  FWTSTMIDSE  RIGALASPAN  QSIHGALARL  WPGNTPPFAV300
WLVLALVVAA  VALWVAARAQ  AAGKTLLALT  ICGMATPMVS  PFAWGHHWVW  CIPLTVLALD360
YANRHRTWWS  WLAPIAVTTP  MIAWYFTDYR  GIKAIGIFMF  EGSPAFEFAV  QFTYPAVFLA420
TLVVVFVGLR  IRPTAEHDDA  RQ442

Predicted 3D structure by AlphaFold2 with pLDDT = 87.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT87(108-341)

MTTSSFRPLY  ARSDSDVRVE  NGQETAIRET  QPEVHATGVG  RLGWRWFLAS  AIAACVAVVA60
HAYFLGWSTP  FGLFGNGIDT  IVYRHGAYVV  QHGEPLYEFA  LFDIGLPFTY  PPFAALAFAP120
LALLSVTSAV  AVVQAINLLL  IYVAVVASWR  ALGYRSATMY  LVSVGLAVAL  TWLEPVRMTI180
WLGQINMLLL  VLVLLDLTRG  EGSRVRGVGV  GIAAGLKLTP  AFFVLHLLAQ  RQWRAAVTAI240
AAFTVTVLAG  LLVIPADSWK  FWTSTMIDSE  RIGALASPAN  QSIHGALARL  WPGNTPPFAV300
WLVLALVVAA  VALWVAARAQ  AAGKTLLALT  ICGMATPMVS  PFAWGHHWVW  CIPLTVLALD360
YANRHRTWWS  WLAPIAVTTP  MIAWYFTDYR  GIKAIGIFMF  EGSPAFEFAV  QFTYPAVFLA420
TLVVVFVGLR  IRPTAEHDDA  RQ442

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help