CAZyme3D

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Entry ID

Information for CAZyme ID: AMX74230.1

Basic Information

GenBank IDAMX74230.1
FamilyGH34
Sequence Length354
UniProt IDA0A161G0Y0(100,100)Download
Average pLDDT?72.61
CAZy50 ID105612
CAZy50 RepNo, BAS83642.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4513
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusHordeum
SpeciesHordeum vulgare

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGSAMEHAGV  AGGRPKKSPG  GSQLWKKALL  HSSLCFVMGF  FTGFAPSSVS  DWRSVAPVGV60
GSSHMVRTPH  LISGAVNRSL  LARGVIPAPG  APQPLLVVVT  TTESTPTAAG  ERAAMLTRMA120
HTLRLVPPPL  LWVVVEAAPD  VPATAKLLRD  TGILYRHLTY  KENFTAAEAA  AGKERHHQRN180
TALEHIERHR  LAAVVHFAGL  GDVYELRFFD  QLRQISTFGA  WPVARMSRNE  RKVVIQGPAC240
SSSKVLGWFS  RDLSNGTTGT  GGGTAATSPE  IDVHGFAFNS  SVLWDPERWG  RYPTSEPDKS300
QDSMRFVQQV  VAEDYSKVKG  IPPDCLEIMV  WGVDAAPATA  PSSSGQTPGN  KRRR354

Predicted 3D structure by AlphaFold2 with pLDDT = 72.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT43(119-334)

MGSAMEHAGV  AGGRPKKSPG  GSQLWKKALL  HSSLCFVMGF  FTGFAPSSVS  DWRSVAPVGV60
GSSHMVRTPH  LISGAVNRSL  LARGVIPAPG  APQPLLVVVT  TTESTPTAAG  ERAAMLTRMA120
HTLRLVPPPL  LWVVVEAAPD  VPATAKLLRD  TGILYRHLTY  KENFTAAEAA  AGKERHHQRN180
TALEHIERHR  LAAVVHFAGL  GDVYELRFFD  QLRQISTFGA  WPVARMSRNE  RKVVIQGPAC240
SSSKVLGWFS  RDLSNGTTGT  GGGTAATSPE  IDVHGFAFNS  SVLWDPERWG  RYPTSEPDKS300
QDSMRFVQQV  VAEDYSKVKG  IPPDCLEIMV  WGVDAAPATA  PSSSGQTPGN  KRRR354

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help