CAZyme3D

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Entry ID

Information for CAZyme ID: AMW08869.1

Basic Information

GenBank IDAMW08869.1
FamilyCBM2, GH5_8
Sequence Length545
UniProt IDA0A143BVJ5(100,100)Download
Average pLDDT?89.91
CAZy50 ID31500
CAZy50 RepNo, ANN17163.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1783515
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces qaidamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVRPPPPPP  RLATVAATLL  ALFLSFLVLT  PPAQAAPTGF  RVQNGRLLEA  GGNDFVMRGV60
NHAHTWFPDR  ISSLAHIKAK  GANTVRVVLS  NGDRWTRNDA  ADVTNVISQC  KQNRLICVLE120
VHDTTGYGEQ  SGATTLSRAA  DYWISVQSAL  AGQEDYVIVN  IGNEPYGNTN  YTAWTADTKA180
AIQKLRNAGF  DHTIMVDAPN  WGQDWAFTMR  DNAASVFAAD  PDANTVFSIH  MYGVFDTAAE240
ITDYLNRFVT  AKLPIVVGEF  GHDHSDGNPD  EDTILAVAQQ  LRLGYLGWSW  SGNGGGVEYL300
DMVTNFDPNQ  LTSWGRRLFN  GVNGIAATAK  EAAVYSGNGG  DTTPPTAPGT  PTASGVTSSS360
ATLTWAAASD  ATGVTGYDVV  RISGGTETAV  TSSTRTTATL  TGLSPATAHT  FAVYARDAAG420
NRSPRSGTVT  VTTSPGGSPS  ACGVGYRVTG  SWQGGFQGEI  VLRNTGTSAI  NGWTLRWTFP480
DSQRITNLWG  GTASQSGSEV  SVAAASYTAT  IPASGSVTLG  FTATRSAANP  SPTAFTLNGA540
DCSVS545

Predicted 3D structure by AlphaFold2 with pLDDT = 89.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_8(49-297)+CBM2(442-542)

MRVRPPPPPP  RLATVAATLL  ALFLSFLVLT  PPAQAAPTGF  RVQNGRLLEA  GGNDFVMRGV60
NHAHTWFPDR  ISSLAHIKAK  GANTVRVVLS  NGDRWTRNDA  ADVTNVISQC  KQNRLICVLE120
VHDTTGYGEQ  SGATTLSRAA  DYWISVQSAL  AGQEDYVIVN  IGNEPYGNTN  YTAWTADTKA180
AIQKLRNAGF  DHTIMVDAPN  WGQDWAFTMR  DNAASVFAAD  PDANTVFSIH  MYGVFDTAAE240
ITDYLNRFVT  AKLPIVVGEF  GHDHSDGNPD  EDTILAVAQQ  LRLGYLGWSW  SGNGGGVEYL300
DMVTNFDPNQ  LTSWGRRLFN  GVNGIAATAK  EAAVYSGNGG  DTTPPTAPGT  PTASGVTSSS360
ATLTWAAASD  ATGVTGYDVV  RISGGTETAV  TSSTRTTATL  TGLSPATAHT  FAVYARDAAG420
NRSPRSGTVT  VTTSPGGSPS  ACGVGYRVTG  SWQGGFQGEI  VLRNTGTSAI  NGWTLRWTFP480
DSQRITNLWG  GTASQSGSEV  SVAAASYTAT  IPASGSVTLG  FTATRSAANP  SPTAFTLNGA540
DCSVS545

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help