CAZyme3D

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Entry ID

Information for CAZyme ID: AMV17454.1

Basic Information

GenBank IDAMV17454.1
FamilyGT2
Sequence Length311
UniProt IDA0A142WS93(100,100)Download
Average pLDDT?85.04
CAZy50 ID145001
CAZy50 RepNo, QDU62769.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1632864
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctomyces
SpeciesPlanctomyces sp. SH-PL14

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSQDVPSSAP  VPPVSTPSSP  SIDGAGNVTM  LLGNGSGPDL  HGTPYTRDWY  LSLRGMLGEG60
ACRQLGFYAI  PEDFVLSVVI  PVYNEKRTIR  DILARVRAVP  VRKEIVIVED  CSRDGTIEIL120
KEIETEAAAW  NDPLNRLAVH  YHPRNRGKGA  AVRTGFAKAT  GDAVIIQDAD  LEYDPEEIPR180
LLQPIVEGEA  DAVFGSRFLG  DQPHRVLYFW  HYLANKVLTT  LSNCFTNLNL  TDMETCYKLF240
KKSVLDDIGP  KLRQDRFGIE  PELTARVARR  RYRVFEMSIS  YHGRTYEEGK  KIGLKDGFQA300
LWCIVRYGLY  D311

Predicted 3D structure by AlphaFold2 with pLDDT = 85.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(77-248)

MSQDVPSSAP  VPPVSTPSSP  SIDGAGNVTM  LLGNGSGPDL  HGTPYTRDWY  LSLRGMLGEG60
ACRQLGFYAI  PEDFVLSVVI  PVYNEKRTIR  DILARVRAVP  VRKEIVIVED  CSRDGTIEIL120
KEIETEAAAW  NDPLNRLAVH  YHPRNRGKGA  AVRTGFAKAT  GDAVIIQDAD  LEYDPEEIPR180
LLQPIVEGEA  DAVFGSRFLG  DQPHRVLYFW  HYLANKVLTT  LSNCFTNLNL  TDMETCYKLF240
KKSVLDDIGP  KLRQDRFGIE  PELTARVARR  RYRVFEMSIS  YHGRTYEEGK  KIGLKDGFQA300
LWCIVRYGLY  D311

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help