CAZyme3D

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Entry ID

Information for CAZyme ID: AMR61888.1

Basic Information

GenBank IDAMR61888.1
FamilyGH51
Sequence Length498
UniProt IDA0A7U5D4J4(100,100)Download
Average pLDDT?97.97
CAZy50 ID43511
CAZy50 RepNo, AAA61708.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1496303
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus subtilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKAGMIIDK  EYKIGQVDKR  IYGSFIEHMG  RAVYEGIYEP  DHPQADESGF  RKDVQSLIKE60
LQVPLIRYPG  GNFLSGYNWE  DGVGPVKDRP  RRLDLAWKTT  ETNQVGTNEF  LSWAKKVNTE120
VNMAVNLGTR  GMDAARNLVE  YCNHPSGSYW  SDLRRSHGYE  APYGIKTWCL  GNEMDGPWQI180
GHKTAEEYGR  LAAETAKVMK  WVDPSIELVA  CGSSNSSMPT  FIDWEAKVLE  HTYDHVDYIS240
LHTYYGNRDN  NLPNYLARSM  DLDHFIKSVA  ATCDYMKAKK  RSKKTIHLSL  DEWNVWYHSN300
EADKKVEPWM  EAPPILEDIY  NFEDALLIGS  LLITILQHAD  RVKIACLAQL  VNVIAPIMTE360
KGGEAWRQPI  FYPYMHASVY  GRGESLKPII  SSPKYDCADF  TDVPYVDAAA  VYHDEDQTLT420
VFAVNKSEEP  METDISLRGF  ESYRIIEHIV  LEHEDIKATN  QKNRKNVVPH  ANGTSSKSEG480
ELKAHFTPLS  WNVIRLQK498

Predicted 3D structure by AlphaFold2 with pLDDT = 97.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(2-497)

MKKAGMIIDK  EYKIGQVDKR  IYGSFIEHMG  RAVYEGIYEP  DHPQADESGF  RKDVQSLIKE60
LQVPLIRYPG  GNFLSGYNWE  DGVGPVKDRP  RRLDLAWKTT  ETNQVGTNEF  LSWAKKVNTE120
VNMAVNLGTR  GMDAARNLVE  YCNHPSGSYW  SDLRRSHGYE  APYGIKTWCL  GNEMDGPWQI180
GHKTAEEYGR  LAAETAKVMK  WVDPSIELVA  CGSSNSSMPT  FIDWEAKVLE  HTYDHVDYIS240
LHTYYGNRDN  NLPNYLARSM  DLDHFIKSVA  ATCDYMKAKK  RSKKTIHLSL  DEWNVWYHSN300
EADKKVEPWM  EAPPILEDIY  NFEDALLIGS  LLITILQHAD  RVKIACLAQL  VNVIAPIMTE360
KGGEAWRQPI  FYPYMHASVY  GRGESLKPII  SSPKYDCADF  TDVPYVDAAA  VYHDEDQTLT420
VFAVNKSEEP  METDISLRGF  ESYRIIEHIV  LEHEDIKATN  QKNRKNVVPH  ANGTSSKSEG480
ELKAHFTPLS  WNVIRLQK498

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help