CAZyme3D

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Entry ID

Information for CAZyme ID: AMO95218.1

Basic Information

GenBank IDAMO95218.1
FamilyCBM5, GH46
Sequence Length365
UniProt IDA0A127PBR6(100,100)Download
Average pLDDT?88.02
CAZy50 ID109239
CAZy50 RepNo, AIY41738.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID158899
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas fungivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRNVRKLLGV  LPICCGMLAF  STSAAASGSA  AGSQARLAVR  IAPCDSAWNG  ATPYVSGNKV60
SYRGINYTAA  YWTQGNYPAS  SSGSADSAQP  WVAGPACRVA  KVAAAASDHD  ANFSPATLQF120
LKTNTGLDGE  QWDNIMKLVN  KPEQDSLDWT  KFYGYCEPLG  DRRGYTIGIF  GATTGGPNDT180
GPDGPALFKE  YDAASGASSP  SIAGGLTRAG  VHGSMQGSIL  NITDSKTVFC  GKIGGLQNNA240
AWREAMWHTF  YNVYIKYSLQ  QARQRGFSSA  LTIGSFVDTA  LNQGADGDSG  SLEGVLAKSG300
SSTNEKTFMT  SFYAQRTKVV  DTNEYNQPPN  GKNRVKQWSS  LLGMGETDLK  DADAAVAKVT360
NWTLK365

Predicted 3D structure by AlphaFold2 with pLDDT = 88.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM5(47-91)+GH46(126-350)

MRNVRKLLGV  LPICCGMLAF  STSAAASGSA  AGSQARLAVR  IAPCDSAWNG  ATPYVSGNKV60
SYRGINYTAA  YWTQGNYPAS  SSGSADSAQP  WVAGPACRVA  KVAAAASDHD  ANFSPATLQF120
LKTNTGLDGE  QWDNIMKLVN  KPEQDSLDWT  KFYGYCEPLG  DRRGYTIGIF  GATTGGPNDT180
GPDGPALFKE  YDAASGASSP  SIAGGLTRAG  VHGSMQGSIL  NITDSKTVFC  GKIGGLQNNA240
AWREAMWHTF  YNVYIKYSLQ  QARQRGFSSA  LTIGSFVDTA  LNQGADGDSG  SLEGVLAKSG300
SSTNEKTFMT  SFYAQRTKVV  DTNEYNQPPN  GKNRVKQWSS  LLGMGETDLK  DADAAVAKVT360
NWTLK365

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help