CAZyme3D

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Entry ID

Information for CAZyme ID: AMO73496.1

Basic Information

GenBank IDAMO73496.1
FamilyGH102
Sequence Length433
UniProt IDA0A127MJS7(100,100)Download
Average pLDDT?85.10
CAZy50 ID75030
CAZy50 RepNo, QCB53410.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1806885
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. M41

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTGVLFGAM  AMLSACSMSI  IPEGAAQSRP  ASQDSEWVAG  DAPDAAVPPP  LYKNGAPARF60
QPVNPAQLVS  IGDDSTRATG  SGVALGPDVA  SLNLTESKAA  SALQSYRTSC  MSLVRREDNS120
GLTNGADWQS  SCTAAQSWQE  KDAARFFESY  FETVQIGDGK  AFATGYFEPQ  INGSRIRSAK180
YPVPVYRRPD  NLLDVDLGLF  SEALKDKRIR  GKVDGTKLVP  FEDRAQIDDG  ALAGQGLEIA240
WAQDYIEFFF  LQIQGSGRLA  LPDGSVMRIG  YAGQNGQDYT  GIGKVMRERG  LLADGKTNMQ300
GIVEWLRANP  QDGMKIMREN  KSYVFFNELT  GPGPLGAMGH  PVVARTSVAA  DRMFVPLGAP360
VFLDMAHDIA  DGLWVAQDSG  GAIKGANRFD  TFWGAGEEAA  RIAGGMSSNG  QALLFLPRGT420
VSRLVAVRQN  AGK433

Predicted 3D structure by AlphaFold2 with pLDDT = 85.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(171-326)

MKTGVLFGAM  AMLSACSMSI  IPEGAAQSRP  ASQDSEWVAG  DAPDAAVPPP  LYKNGAPARF60
QPVNPAQLVS  IGDDSTRATG  SGVALGPDVA  SLNLTESKAA  SALQSYRTSC  MSLVRREDNS120
GLTNGADWQS  SCTAAQSWQE  KDAARFFESY  FETVQIGDGK  AFATGYFEPQ  INGSRIRSAK180
YPVPVYRRPD  NLLDVDLGLF  SEALKDKRIR  GKVDGTKLVP  FEDRAQIDDG  ALAGQGLEIA240
WAQDYIEFFF  LQIQGSGRLA  LPDGSVMRIG  YAGQNGQDYT  GIGKVMRERG  LLADGKTNMQ300
GIVEWLRANP  QDGMKIMREN  KSYVFFNELT  GPGPLGAMGH  PVVARTSVAA  DRMFVPLGAP360
VFLDMAHDIA  DGLWVAQDSG  GAIKGANRFD  TFWGAGEEAA  RIAGGMSSNG  QALLFLPRGT420
VSRLVAVRQN  AGK433

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help