Information for CAZyme ID: AMO24660.1
Basic Information
| GenBank ID | AMO24660.1 |
| Family | GT20 |
| Sequence Length | 741 |
| UniProt ID | A0A127JXD9(100,100) |
| Average pLDDT? | 86.32 |
| CAZy50 ID | 27405 |
| CAZy50 Rep | No, AWI52656.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 94132 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Ramlibacter |
| Species | Ramlibacter tataouinensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRLQLRFLLP LLIVLGVAAW LAVPLMDRLT LRWFARDLAM RGSLLATALA ESVVDATPDP | 60 |
| KGRKLRALFD RAAQDERLVA IGLCSVDNHL INASQSFPKE LDCESTKEIA SQPDPTRRVG | 120 |
| GGTVQVGRHP VTSEAGPIGD LVLIHDLSFI ERRSQDTRRY LILLIAGMGG VIALVTMAVA | 180 |
| QLSLRGWVSG TRALLRGEGL LRPLGPPLPE LAPIAADLRS RLRDLQDEYR RAHGPETEWG | 240 |
| AERLQALLRS QLSGDQVIVV SNREPYIHQR VDGRIEVQRP ASGLVTAIEP VMRACSGTWV | 300 |
| AHGSGSADRE TVDRDDHVRL PPDDPAYHLR RIWLNPAEEQ GYYYGFANEG LWPLCHVAHV | 360 |
| RPVFREADWQ HYREVNRRFA DAVVQEARSD DPIVLVQDYH FALVPAMLRE RLPRATILTF | 420 |
| WHIPWPNPES FGICPWRREI LQGMLGSTIL GFHTRFHCKN FIETVDRYLE ARIEHEHSTI | 480 |
| AYGGAETLIE SYPISIAWPE GESGSHWPPV DECRRRVFQH LGLPEGHKLA VGVDRFDYTK | 540 |
| GILERMHAVE RLLEKHPQWL GRFTFVQVAA PTRGQLDEYR EFQERIHRVA QRINERFGAT | 600 |
| GRPVVRLLAS HHGPEQVNEL YRAANICMVT SLHDGMNLVC KEFVAARDDE QGVLVLSRFA | 660 |
| GAAREMPEAL IVNPYHVEET ADALQRALEM PAAEQRERMA SLRTTVREFN VYRWAGRMLT | 720 |
| DAARWRLRRR IEERVERHSA L | 741 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.32 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT20(254-722)
| MRLQLRFLLP LLIVLGVAAW LAVPLMDRLT LRWFARDLAM RGSLLATALA ESVVDATPDP | 60 |
| KGRKLRALFD RAAQDERLVA IGLCSVDNHL INASQSFPKE LDCESTKEIA SQPDPTRRVG | 120 |
| GGTVQVGRHP VTSEAGPIGD LVLIHDLSFI ERRSQDTRRY LILLIAGMGG VIALVTMAVA | 180 |
| QLSLRGWVSG TRALLRGEGL LRPLGPPLPE LAPIAADLRS RLRDLQDEYR RAHGPETEWG | 240 |
| AERLQALLRS QLSGDQVIVV SNREPYIHQR VDGRIEVQRP ASGLVTAIEP VMRACSGTWV | 300 |
| AHGSGSADRE TVDRDDHVRL PPDDPAYHLR RIWLNPAEEQ GYYYGFANEG LWPLCHVAHV | 360 |
| RPVFREADWQ HYREVNRRFA DAVVQEARSD DPIVLVQDYH FALVPAMLRE RLPRATILTF | 420 |
| WHIPWPNPES FGICPWRREI LQGMLGSTIL GFHTRFHCKN FIETVDRYLE ARIEHEHSTI | 480 |
| AYGGAETLIE SYPISIAWPE GESGSHWPPV DECRRRVFQH LGLPEGHKLA VGVDRFDYTK | 540 |
| GILERMHAVE RLLEKHPQWL GRFTFVQVAA PTRGQLDEYR EFQERIHRVA QRINERFGAT | 600 |
| GRPVVRLLAS HHGPEQVNEL YRAANICMVT SLHDGMNLVC KEFVAARDDE QGVLVLSRFA | 660 |
| GAAREMPEAL IVNPYHVEET ADALQRALEM PAAEQRERMA SLRTTVREFN VYRWAGRMLT | 720 |
| DAARWRLRRR IEERVERHSA L | 741 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.