CAZyme3D

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Entry ID

Information for CAZyme ID: AMO24660.1

Basic Information

GenBank IDAMO24660.1
FamilyGT20
Sequence Length741
UniProt IDA0A127JXD9(100,100)Download
Average pLDDT?86.32
CAZy50 ID27405
CAZy50 RepNo, AWI52656.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID94132
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRamlibacter
SpeciesRamlibacter tataouinensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLQLRFLLP  LLIVLGVAAW  LAVPLMDRLT  LRWFARDLAM  RGSLLATALA  ESVVDATPDP60
KGRKLRALFD  RAAQDERLVA  IGLCSVDNHL  INASQSFPKE  LDCESTKEIA  SQPDPTRRVG120
GGTVQVGRHP  VTSEAGPIGD  LVLIHDLSFI  ERRSQDTRRY  LILLIAGMGG  VIALVTMAVA180
QLSLRGWVSG  TRALLRGEGL  LRPLGPPLPE  LAPIAADLRS  RLRDLQDEYR  RAHGPETEWG240
AERLQALLRS  QLSGDQVIVV  SNREPYIHQR  VDGRIEVQRP  ASGLVTAIEP  VMRACSGTWV300
AHGSGSADRE  TVDRDDHVRL  PPDDPAYHLR  RIWLNPAEEQ  GYYYGFANEG  LWPLCHVAHV360
RPVFREADWQ  HYREVNRRFA  DAVVQEARSD  DPIVLVQDYH  FALVPAMLRE  RLPRATILTF420
WHIPWPNPES  FGICPWRREI  LQGMLGSTIL  GFHTRFHCKN  FIETVDRYLE  ARIEHEHSTI480
AYGGAETLIE  SYPISIAWPE  GESGSHWPPV  DECRRRVFQH  LGLPEGHKLA  VGVDRFDYTK540
GILERMHAVE  RLLEKHPQWL  GRFTFVQVAA  PTRGQLDEYR  EFQERIHRVA  QRINERFGAT600
GRPVVRLLAS  HHGPEQVNEL  YRAANICMVT  SLHDGMNLVC  KEFVAARDDE  QGVLVLSRFA660
GAAREMPEAL  IVNPYHVEET  ADALQRALEM  PAAEQRERMA  SLRTTVREFN  VYRWAGRMLT720
DAARWRLRRR  IEERVERHSA  L741

Predicted 3D structure by AlphaFold2 with pLDDT = 86.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(254-722)

MRLQLRFLLP  LLIVLGVAAW  LAVPLMDRLT  LRWFARDLAM  RGSLLATALA  ESVVDATPDP60
KGRKLRALFD  RAAQDERLVA  IGLCSVDNHL  INASQSFPKE  LDCESTKEIA  SQPDPTRRVG120
GGTVQVGRHP  VTSEAGPIGD  LVLIHDLSFI  ERRSQDTRRY  LILLIAGMGG  VIALVTMAVA180
QLSLRGWVSG  TRALLRGEGL  LRPLGPPLPE  LAPIAADLRS  RLRDLQDEYR  RAHGPETEWG240
AERLQALLRS  QLSGDQVIVV  SNREPYIHQR  VDGRIEVQRP  ASGLVTAIEP  VMRACSGTWV300
AHGSGSADRE  TVDRDDHVRL  PPDDPAYHLR  RIWLNPAEEQ  GYYYGFANEG  LWPLCHVAHV360
RPVFREADWQ  HYREVNRRFA  DAVVQEARSD  DPIVLVQDYH  FALVPAMLRE  RLPRATILTF420
WHIPWPNPES  FGICPWRREI  LQGMLGSTIL  GFHTRFHCKN  FIETVDRYLE  ARIEHEHSTI480
AYGGAETLIE  SYPISIAWPE  GESGSHWPPV  DECRRRVFQH  LGLPEGHKLA  VGVDRFDYTK540
GILERMHAVE  RLLEKHPQWL  GRFTFVQVAA  PTRGQLDEYR  EFQERIHRVA  QRINERFGAT600
GRPVVRLLAS  HHGPEQVNEL  YRAANICMVT  SLHDGMNLVC  KEFVAARDDE  QGVLVLSRFA660
GAAREMPEAL  IVNPYHVEET  ADALQRALEM  PAAEQRERMA  SLRTTVREFN  VYRWAGRMLT720
DAARWRLRRR  IEERVERHSA  L741

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help