CAZyme3D

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Entry ID

Information for CAZyme ID: AMM52580.1

Basic Information

GenBank IDAMM52580.1
FamilyGH125
Sequence Length475
UniProt IDA0A127B5B6(100,100)Download
Average pLDDT?94.46
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1379909
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter sp. DG15C

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTRREFVKK  STIATLGLAA  VGFPFNALAA  SEPFTSKRPA  LAKRNFTSKA  IEKKLAEVKK60
AIGDKELAWL  FENCFPNTLD  TTVHYKEVNG  KPDTFVITGD  IEAMWLRDST  AQVWPYLPFT120
KEEKKLQNLV  AGVINRQTKC  ILIDPYANAF  NDGPKGSEWK  SDLTTMKPEL  HERKWEIDSL180
CYPIRLAYHY  WKTTGDISPF  DTDWQRAMQL  VVKTFREQQR  KEGKGPYTFQ  RNTPKQTDTV240
SGAGYGNPIN  PVGLICSTFR  PSDDATIYLF  LVPSNHFAVT  SLRQLAEMSQ  KITKDNQLAT300
ECTNLANEVE  IALAKLAVAE  HLQYGKVFPF  EVDGYGNQLF  MDDANIPSLL  AMPYLGACSL360
QDPVYQNTRK  FALSKDNPWY  FSGKAGKGIG  GPHVGPDMIW  PMSIIMQAMT  SQSEQEIKEC420
LQTLKTTHAG  TGFMHETFHK  DDPSKFTREW  FAWANTLFGE  LILKLHAERP  HLLKA475

Predicted 3D structure by AlphaFold2 with pLDDT = 94.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(64-463)

MPTRREFVKK  STIATLGLAA  VGFPFNALAA  SEPFTSKRPA  LAKRNFTSKA  IEKKLAEVKK60
AIGDKELAWL  FENCFPNTLD  TTVHYKEVNG  KPDTFVITGD  IEAMWLRDST  AQVWPYLPFT120
KEEKKLQNLV  AGVINRQTKC  ILIDPYANAF  NDGPKGSEWK  SDLTTMKPEL  HERKWEIDSL180
CYPIRLAYHY  WKTTGDISPF  DTDWQRAMQL  VVKTFREQQR  KEGKGPYTFQ  RNTPKQTDTV240
SGAGYGNPIN  PVGLICSTFR  PSDDATIYLF  LVPSNHFAVT  SLRQLAEMSQ  KITKDNQLAT300
ECTNLANEVE  IALAKLAVAE  HLQYGKVFPF  EVDGYGNQLF  MDDANIPSLL  AMPYLGACSL360
QDPVYQNTRK  FALSKDNPWY  FSGKAGKGIG  GPHVGPDMIW  PMSIIMQAMT  SQSEQEIKEC420
LQTLKTTHAG  TGFMHETFHK  DDPSKFTREW  FAWANTLFGE  LILKLHAERP  HLLKA475

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help