Information for CAZyme ID: AMM51805.1
Basic Information
| GenBank ID | AMM51805.1 |
| Family | GH92 |
| Sequence Length | 764 |
| UniProt ID | A0A127B3P2(100,100) |
| Average pLDDT? | 95.75 |
| CAZy50 ID | 6582 |
| CAZy50 Rep | No, QQY43010.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1379909 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Hymenobacteraceae |
| Genus | Rufibacter |
| Species | Rufibacter sp. DG15C |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRKLFFLTFL LLQFSAFAQK PPFDLVRWVN PMIGTAKMGH TYPGATAPFG MVQLSPDTDT | 60 |
| IPYEMGGKYN KDVYKYCAGY QYDDPTIVGF SHTHFSGTGH SDLGDFLIMP TTGKLQLNPG | 120 |
| TETQPESGFR SKFSHNNERA EAAYYSVKLD DHNIQAELTA TNRVGMHQYT FPKSDEAHII | 180 |
| LDLMHGIYNY EDKNTWTFVR IENDTLITGY RMTNGWARTR TVYFAMSFSK PFTSYGNKDY | 240 |
| SKAQVYKGFW RKFDQTKNFP EMAGKQLRAY FDFKTEEGEK LKIKFALSPV STAGALANMR | 300 |
| AEIPHWDFDR VKYESQALWN KELGKVRAVL PTKDDYINFY TALYHTFLGP TTYMDVDNQY | 360 |
| RGLDQNNHVA NGFTNYTTFS LWDTYRALHP WFNIVQPKRN ADMVSSMLAH YDQSVHNMLP | 420 |
| VWSHHANENW CMIGYHSVSV IADAIMKGTY TGDANRALDA CVATARQGYY DGLQYYMQLG | 480 |
| YVPEDKNGSS VSKTLEYAYD DWCIAKMAQK LGRQDVYQEF SKRAQNWKNV YDTRIGYMRP | 540 |
| KLSDGTFKKE FDVLSTHNQG FIEGNAWNYS LYVPHAPAEM IQVMGGNKKF VSHLDSLFTM | 600 |
| HLPDEFFADT EDITREGIIG NYVHGNEPAH HVAYLYNWTD QPWKTQERVR MILKKQYQAT | 660 |
| VDGLGGNDDC GQMSAWYLFS SLGFYPVAPG STQYALGSPS VKEATIQLEN GKTFTIEAKN | 720 |
| QSDKNVFVQK VELNGKTLNQ PFLNHADLAN GGKLTFYMSS KPKK | 764 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.75 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH92(266-762)
| MRKLFFLTFL LLQFSAFAQK PPFDLVRWVN PMIGTAKMGH TYPGATAPFG MVQLSPDTDT | 60 |
| IPYEMGGKYN KDVYKYCAGY QYDDPTIVGF SHTHFSGTGH SDLGDFLIMP TTGKLQLNPG | 120 |
| TETQPESGFR SKFSHNNERA EAAYYSVKLD DHNIQAELTA TNRVGMHQYT FPKSDEAHII | 180 |
| LDLMHGIYNY EDKNTWTFVR IENDTLITGY RMTNGWARTR TVYFAMSFSK PFTSYGNKDY | 240 |
| SKAQVYKGFW RKFDQTKNFP EMAGKQLRAY FDFKTEEGEK LKIKFALSPV STAGALANMR | 300 |
| AEIPHWDFDR VKYESQALWN KELGKVRAVL PTKDDYINFY TALYHTFLGP TTYMDVDNQY | 360 |
| RGLDQNNHVA NGFTNYTTFS LWDTYRALHP WFNIVQPKRN ADMVSSMLAH YDQSVHNMLP | 420 |
| VWSHHANENW CMIGYHSVSV IADAIMKGTY TGDANRALDA CVATARQGYY DGLQYYMQLG | 480 |
| YVPEDKNGSS VSKTLEYAYD DWCIAKMAQK LGRQDVYQEF SKRAQNWKNV YDTRIGYMRP | 540 |
| KLSDGTFKKE FDVLSTHNQG FIEGNAWNYS LYVPHAPAEM IQVMGGNKKF VSHLDSLFTM | 600 |
| HLPDEFFADT EDITREGIIG NYVHGNEPAH HVAYLYNWTD QPWKTQERVR MILKKQYQAT | 660 |
| VDGLGGNDDC GQMSAWYLFS SLGFYPVAPG STQYALGSPS VKEATIQLEN GKTFTIEAKN | 720 |
| QSDKNVFVQK VELNGKTLNQ PFLNHADLAN GGKLTFYMSS KPKK | 764 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.