Information for CAZyme ID: AMM25516.1
Basic Information
| GenBank ID | AMM25516.1 |
| Family | GT4 |
| Sequence Length | 415 |
| UniProt ID | A0A126ZEX8(100,100) |
| Average pLDDT? | 93.36 |
| CAZy50 ID | 53751 |
| CAZy50 Rep | No, QYY34181.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1795631 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PAMC 28711 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKILLYGINF TPELTGIGKY TGEMARWLAK AGHEVRVITA PPYYPNWSVQ PPFRADRYTR | 60 |
| ETWEGVEVYR APLWVPAVPS GLKRLVHLAS FAASSFPLLV AQWRWKPDVV WVTEPPLLCT | 120 |
| PGALLFAKLR QTIAWLHVQD YELDAAFDLG LLRGETTRSV ATAMERRLMR AFDCVSTISG | 180 |
| RMLDRARSKG VDEANLFLLP NWVDLNGVRP LAQPSAYRQK LGIPLDATVA LYSGNMGNKQ | 240 |
| GLEILSDVAR RVHDRPDIHF VFCGDGSGRA ELVAQCAGLD RVHFLPLQPL ENLSDLLGLA | 300 |
| DVHLLPQRAD AADLVMPSKL TGMLSSGRPV IATAHPGTEL ASVVEQCGIV VAPADAAALT | 360 |
| TALLTLAADA PLRSELGTKA RHYAEQHLGQ DAVLRRFELE LEKRVAARRG EVAAT | 415 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.36 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT4(224-377)
| MKILLYGINF TPELTGIGKY TGEMARWLAK AGHEVRVITA PPYYPNWSVQ PPFRADRYTR | 60 |
| ETWEGVEVYR APLWVPAVPS GLKRLVHLAS FAASSFPLLV AQWRWKPDVV WVTEPPLLCT | 120 |
| PGALLFAKLR QTIAWLHVQD YELDAAFDLG LLRGETTRSV ATAMERRLMR AFDCVSTISG | 180 |
| RMLDRARSKG VDEANLFLLP NWVDLNGVRP LAQPSAYRQK LGIPLDATVA LYSGNMGNKQ | 240 |
| GLEILSDVAR RVHDRPDIHF VFCGDGSGRA ELVAQCAGLD RVHFLPLQPL ENLSDLLGLA | 300 |
| DVHLLPQRAD AADLVMPSKL TGMLSSGRPV IATAHPGTEL ASVVEQCGIV VAPADAAALT | 360 |
| TALLTLAADA PLRSELGTKA RHYAEQHLGQ DAVLRRFELE LEKRVAARRG EVAAT | 415 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.