CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AMM23644.1

Basic Information

GenBank IDAMM23644.1
FamilyCE4
Sequence Length304
UniProt IDA0A126ZAN7(100,100)Download
Average pLDDT?97.64
CAZy50 ID35812
CAZy50 RepNo, QXC61059.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1795631
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVGYGRDVPH  AQWPGGAKIA  VQFVLNYEEG  GENNPLHGDP  TSETFLSELV  TAQAYENRHM60
TMESMYEYGS  RAGVWRILRE  FESRGLPMTV  FAVGMALQRY  PELLDTFLKN  GYEIANHGLR120
WIHYQNLPEQ  NERRHMGLAT  HVLKDMTGGQ  WPLGWYTGRD  SPNTRRLLVD  QGGYEYDSDY180
YGDDLPFWME  VAKSDGDMVP  HLVVPYSLDC  NDMRFVQAQG  FNTGDHFFNY  LKDSFDALYA240
EGDTAPKMMS  VGMHCRLLGK  PGRIGSLQRF  LDYVQSHEKV  WVCRRIDIAR  HWKKVHPFTP300
KKGD304

Predicted 3D structure by AlphaFold2 with pLDDT = 97.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(71-178)

MVGYGRDVPH  AQWPGGAKIA  VQFVLNYEEG  GENNPLHGDP  TSETFLSELV  TAQAYENRHM60
TMESMYEYGS  RAGVWRILRE  FESRGLPMTV  FAVGMALQRY  PELLDTFLKN  GYEIANHGLR120
WIHYQNLPEQ  NERRHMGLAT  HVLKDMTGGQ  WPLGWYTGRD  SPNTRRLLVD  QGGYEYDSDY180
YGDDLPFWME  VAKSDGDMVP  HLVVPYSLDC  NDMRFVQAQG  FNTGDHFFNY  LKDSFDALYA240
EGDTAPKMMS  VGMHCRLLGK  PGRIGSLQRF  LDYVQSHEKV  WVCRRIDIAR  HWKKVHPFTP300
KKGD304

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help