CAZyme3D

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Entry ID

Information for CAZyme ID: AML28730.1

Basic Information

GenBank IDAML28730.1
FamilyGT2
Sequence Length213
UniProt IDA0A182BFM8(100,100)Download
Average pLDDT?88.37
CAZy50 ID20936
CAZy50 RepNo, UAM96519.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID31408
KingdomEukaryota
PhylumRhodophyta
ClassFlorideophyceae
OrderGelidiales
FamilyPterocladiaceae
GenusPterocladia
SpeciesPterocladia lucida

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

AIETHFFDFG  PFHEDRYAPD  ALPRLSLITR  VKPADHHNKA  GNINNVLFNA  GTDGKVILFL60
DADMQPTPNF  LLRTVPLLLE  EMRDDAVENR  MMFDDDPEIG  RASNTAWRVN  RDVAFIQAPQ120
RFHNVDHADV  MAHRNAIFYD  GICRGRDGFG  LTPFVGTNAL  WRREVLAEIG  GFVYGSVTED180
TLTSNEVHRR  GYISKYAAED  LAWGEAPVSV  AAA213

Predicted 3D structure by AlphaFold2 with pLDDT = 88.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(27-212)

AIETHFFDFG  PFHEDRYAPD  ALPRLSLITR  VKPADHHNKA  GNINNVLFNA  GTDGKVILFL60
DADMQPTPNF  LLRTVPLLLE  EMRDDAVENR  MMFDDDPEIG  RASNTAWRVN  RDVAFIQAPQ120
RFHNVDHADV  MAHRNAIFYD  GICRGRDGFG  LTPFVGTNAL  WRREVLAEIG  GFVYGSVTED180
TLTSNEVHRR  GYISKYAAED  LAWGEAPVSV  AAA213

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help