CAZyme3D

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Entry ID

Information for CAZyme ID: AMK18625.1

Basic Information

GenBank IDAMK18625.1
FamilyGT4
Sequence Length342
UniProt IDA0A126RAM3(100,100)Download
Average pLDDT?92.61
CAZy50 ID75684
CAZy50 RepNo, QQP87940.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID407020
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingobium
SpeciesSphingobium sp. MI1205
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A126RAM3.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRIVIVTDAW  LPQVNGVVRT  LQTIQTELEA  RGHLVKVISP  DLYGSIPCPT  YPEIRLAFVR60
SSVVGQAIAA  FQPDAVHLAT  EGPLCLAARR  WCLRGGVPFT  TAYHTHFPDY  VARRTGLPAR120
WFWSYIRWFH  GPAQAVLVST  KSVRQQLRAH  GLAQVRPWGR  GVDLAAFTPD  AAPPSLFAGL180
THPIQLYVGR  VAIEKNLEAF  LASGHPGSKV  VVGDGPARAH  LEHAYPGAHF  MGALFGEELA240
GAYAGADVFV  FPSRTDTFGL  VMIEALACGT  PVAAYPVTGP  IDIVTPECGA  LSERLDDAIA300
AALLRDRAAC  AAHGGSFSWQ  RSADEFLTAL  HCIDPAVMDS  AA342

Predicted 3D structure by AlphaFold2 with pLDDT = 92.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(182-304)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help