CAZyme3D

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Entry ID

Information for CAZyme ID: AMD91190.1

Basic Information

GenBank IDAMD91190.1
FamilyGT4
Sequence Length378
UniProt IDA0A109W4Z4(100,100)Download
Average pLDDT?93.84
CAZy50 ID100406
CAZy50 RepNo, SFV73719.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID44742
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio fairfieldensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIIVLGNQA  RALSNFWSVL  IRQMRQGGHE  ALCCVPPGDP  EADAALETLG  ARVLHYELDR60
KGLNPLHDAR  SFARLRRIFD  AEKPDLLFAS  TIKPVIYGGL  AARRARVPHV  YATITGLGYA120
FEADSLFKKC  VNRLSVFLYR  QALKNAEGVF  FQNQDDIRIF  RESGILGPGA  RVLTARGTGV180
DIRRFAQAPL  PPLPPDGPVI  FLLVGRLLEA  KGLPEYAAAA  RLLRARYPEA  RFQLLGPPEQ240
GLGSVSLDQV  RTWERENGIE  YLGETRDVRP  YLAAAHVLVL  PSWREGTPTS  IMEGMSMGRA300
AVVTDVPGCR  EVVRDGVNGR  MTPVRDPEAL  AGAMESFILA  PGTIARMGEA  GRELAVREFD360
AEKVAARILR  DMHVPAGA378

Predicted 3D structure by AlphaFold2 with pLDDT = 93.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(197-347)

MKIIVLGNQA  RALSNFWSVL  IRQMRQGGHE  ALCCVPPGDP  EADAALETLG  ARVLHYELDR60
KGLNPLHDAR  SFARLRRIFD  AEKPDLLFAS  TIKPVIYGGL  AARRARVPHV  YATITGLGYA120
FEADSLFKKC  VNRLSVFLYR  QALKNAEGVF  FQNQDDIRIF  RESGILGPGA  RVLTARGTGV180
DIRRFAQAPL  PPLPPDGPVI  FLLVGRLLEA  KGLPEYAAAA  RLLRARYPEA  RFQLLGPPEQ240
GLGSVSLDQV  RTWERENGIE  YLGETRDVRP  YLAAAHVLVL  PSWREGTPTS  IMEGMSMGRA300
AVVTDVPGCR  EVVRDGVNGR  MTPVRDPEAL  AGAMESFILA  PGTIARMGEA  GRELAVREFD360
AEKVAARILR  DMHVPAGA378

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help