CAZyme3D

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Entry ID

Information for CAZyme ID: AMB78508.1

Basic Information

GenBank IDAMB78508.1
FamilyGH50
Sequence Length783
UniProt IDA0A109R7P1(100,100)Download
Average pLDDT?89.87
CAZy50 ID24417
CAZy50 RepNo, AYC33831.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fragi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRSLSAVF  ALLVTTPLLA  APAGQQTLFN  FVRPADVVQV  ATVDASLPQY  NAEQTAEGEV60
LRRVTFNPAA  APSLRLTPQT  GAWDWSQSGM  MTLRIQNAMN  WALTLDVTVQ  SNNGKTLTSR120
VDLPAGPAQT  LLLPLQANSP  YSQGMRAGPP  MPMTVDGQRI  LLASTQGAID  LSQVVSVTLS180
IPQPNAAQSI  LLERFGVQDD  AGVIKAVYGS  IVDSYGQSTR  AKWPERVAND  EQLKAAAAKE240
QQLLKGWLAK  RGDQDKFGGS  LKGPGFKATG  FFYTEKRNGR  WNLVTPQGHP  FYSLGLNAVT300
ANDSQTYVAG  REWMFTDLPE  QGAPLAGYYG  SSNSNNGNGS  AQGRGYNVGR  WYNFYGANLQ360
RIYAQPCDAG  KTVPGAEPVI  PCAPQVIDAK  RWQEHALDRL  QAWGFNTIGN  WSDPELGLND420
RVPYTLPLSI  VGDYASISTG  ADWWGGMPDP  FDPRFAMATE  RAVAIAARDH  RDDPWLIGYF480
ADNELAWAGP  GNDPASRYAL  ALGTLRLTTD  VPAKRAFLKQ  LRDKYRNQQG  LSKAWGVDIP540
AWELMEDPGF  EAPLPNAEHP  EIEADYQYFQ  KVFADTYFKT  ISDSLKWHAP  NHLLLGGRFA600
VSTPEAVASC  AKYCDVLSFN  FYTLQPQDGY  DFAKLRELDK  PVMITEFNFG  SRDRGPFWGG660
MTEVASEEAR  GPAYARFLKQ  AVAEPSIVGV  HWFQYLDQPV  TGRLLDGENG  HFGMIGITDL720
PFTGFVDSVR  KTNLLVLDQL  GQEAAKDQVD  ADQAAKAPVH  TPQDGSAGSS  GPGHAGGHSG780
KGH783

Predicted 3D structure by AlphaFold2 with pLDDT = 89.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(76-734)

MIRRSLSAVF  ALLVTTPLLA  APAGQQTLFN  FVRPADVVQV  ATVDASLPQY  NAEQTAEGEV60
LRRVTFNPAA  APSLRLTPQT  GAWDWSQSGM  MTLRIQNAMN  WALTLDVTVQ  SNNGKTLTSR120
VDLPAGPAQT  LLLPLQANSP  YSQGMRAGPP  MPMTVDGQRI  LLASTQGAID  LSQVVSVTLS180
IPQPNAAQSI  LLERFGVQDD  AGVIKAVYGS  IVDSYGQSTR  AKWPERVAND  EQLKAAAAKE240
QQLLKGWLAK  RGDQDKFGGS  LKGPGFKATG  FFYTEKRNGR  WNLVTPQGHP  FYSLGLNAVT300
ANDSQTYVAG  REWMFTDLPE  QGAPLAGYYG  SSNSNNGNGS  AQGRGYNVGR  WYNFYGANLQ360
RIYAQPCDAG  KTVPGAEPVI  PCAPQVIDAK  RWQEHALDRL  QAWGFNTIGN  WSDPELGLND420
RVPYTLPLSI  VGDYASISTG  ADWWGGMPDP  FDPRFAMATE  RAVAIAARDH  RDDPWLIGYF480
ADNELAWAGP  GNDPASRYAL  ALGTLRLTTD  VPAKRAFLKQ  LRDKYRNQQG  LSKAWGVDIP540
AWELMEDPGF  EAPLPNAEHP  EIEADYQYFQ  KVFADTYFKT  ISDSLKWHAP  NHLLLGGRFA600
VSTPEAVASC  AKYCDVLSFN  FYTLQPQDGY  DFAKLRELDK  PVMITEFNFG  SRDRGPFWGG660
MTEVASEEAR  GPAYARFLKQ  AVAEPSIVGV  HWFQYLDQPV  TGRLLDGENG  HFGMIGITDL720
PFTGFVDSVR  KTNLLVLDQL  GQEAAKDQVD  ADQAAKAPVH  TPQDGSAGSS  GPGHAGGHSG780
KGH783

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help