CAZyme3D

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Entry ID

Information for CAZyme ID: ALV47324.1

Basic Information

GenBank IDALV47324.1
FamilyGH3
Sequence Length482
UniProt IDA0A0U3RDZ4(100,100)Download
Average pLDDT?90.77
CAZy50 ID61412
CAZy50 RepNo, ALO67901.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID656366
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter alpinus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPRLINSVIL  PGFVGTTAPQ  WLVTALKNGL  AGVVYFSHNI  DPDAPGQVAA  LSAEIRAANP60
DVVIGVDEEG  GNVTRLQARD  GSSIPGAAAL  GALDELTTTE  AAGRAIGRLC  RDAGINLTIA120
PVADVNTNPL  NPVIGVRAFG  SDTALVSAHT  AAAITGIQDL  RVAACAKHFP  GHGDTVADSH180
MDVARVELTM  DQMRQHHLPP  FKAAVDAGVA  AMMSAHIIIP  ELGEAPATLN  PAASALLREM240
GFEGVLITDA  LDMAAVRATV  GPGEGAVLAL  LAGNDLLCVG  NPLNAYTTGR  DDESCYTEVY300
DALFAAVVSG  RLPVEFLRRA  AARVQGLAEW  SAEAPSQLAD  DAVGWVSVAA  RACRTDSLGA360
RPVLAGAGSV  TLVDARTGHN  MAAGPTENFL  AAALANYTVT  ALPAASFEAD  LTAGPAGPVL420
VLVDSLASPE  QQDSLRKVLA  AAPQAVCVNA  GLATGTTSAT  ATIHAHGFSR  ITAQAVVSLL480
EA482

Predicted 3D structure by AlphaFold2 with pLDDT = 90.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(58-279)

MPRLINSVIL  PGFVGTTAPQ  WLVTALKNGL  AGVVYFSHNI  DPDAPGQVAA  LSAEIRAANP60
DVVIGVDEEG  GNVTRLQARD  GSSIPGAAAL  GALDELTTTE  AAGRAIGRLC  RDAGINLTIA120
PVADVNTNPL  NPVIGVRAFG  SDTALVSAHT  AAAITGIQDL  RVAACAKHFP  GHGDTVADSH180
MDVARVELTM  DQMRQHHLPP  FKAAVDAGVA  AMMSAHIIIP  ELGEAPATLN  PAASALLREM240
GFEGVLITDA  LDMAAVRATV  GPGEGAVLAL  LAGNDLLCVG  NPLNAYTTGR  DDESCYTEVY300
DALFAAVVSG  RLPVEFLRRA  AARVQGLAEW  SAEAPSQLAD  DAVGWVSVAA  RACRTDSLGA360
RPVLAGAGSV  TLVDARTGHN  MAAGPTENFL  AAALANYTVT  ALPAASFEAD  LTAGPAGPVL420
VLVDSLASPE  QQDSLRKVLA  AAPQAVCVNA  GLATGTTSAT  ATIHAHGFSR  ITAQAVVSLL480
EA482

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help