CAZyme3D

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Entry ID

Information for CAZyme ID: ALV05195.1

Basic Information

GenBank IDALV05195.1
FamilyCBM20, GH13_32
Sequence Length624
UniProt IDA0A0U3MZ15(100,100)Download
Average pLDDT?90.50
CAZy50 ID48644
CAZy50 RepNo, WAC75514.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76731
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesRoseateles depolymerans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPQLPFLSRR  LAHALTVTAS  AALTVFASPA  QALNPNSTSV  QMFEWAWPDI  ATECTQWLGP60
KGFGGVQISP  PGASKNANGW  WGVYQPVNYA  NLTSRMGTPA  QLQSMISACH  AAGVRVYADI120
VVNQMADGSG  TATDGSTWNA  ATLTYPFFSA  NDFHANCVIN  DADYNSPAGR  SNVQNCRLGG180
LPDLATESSY  VQGQIVNYLK  SLLALGIDGF  RIDAAKHMPA  SAWTSIMSAV  KTAYPKTLQG240
ENIWLTQEII  NDGEVDRPSY  FPIGTINEFQ  FTYAMRDVFR  GNNGNSLSSI  PGIMGTWGNW300
GGSWGFIQPQ  NATVFITNWD  TERNGSSLNI  NNAAGNDAAN  QRYTLANIFM  LAQGYAEAQL360
YSGFKFSNTD  ADRPTTSPYS  GGVPQINVVW  DFAHRWTPLA  NMVGFRNASI  GQPQQNWIVG420
NNGNQVAFSR  GNVGFVALNN  SGSAWTRSFA  TGLAAGTYCN  VINGTKNAAG  TACTADSVTV480
DASGNASFTV  PANNSGSTPA  VAIYTGQKVT  GGGGGGTGTC  AVTFTIANAN  TVVGQNLRVV540
GSVSGLGAWA  PASGFALTIQ  GSGANVPWSG  TVTLPAGTAI  QYKYVKWNGS  NAVWESNQTT600
SSGNREFTSC  ASGSQARSDG  NFKF624

Predicted 3D structure by AlphaFold2 with pLDDT = 90.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_32(62-352)+CBM20(521-613)

MPQLPFLSRR  LAHALTVTAS  AALTVFASPA  QALNPNSTSV  QMFEWAWPDI  ATECTQWLGP60
KGFGGVQISP  PGASKNANGW  WGVYQPVNYA  NLTSRMGTPA  QLQSMISACH  AAGVRVYADI120
VVNQMADGSG  TATDGSTWNA  ATLTYPFFSA  NDFHANCVIN  DADYNSPAGR  SNVQNCRLGG180
LPDLATESSY  VQGQIVNYLK  SLLALGIDGF  RIDAAKHMPA  SAWTSIMSAV  KTAYPKTLQG240
ENIWLTQEII  NDGEVDRPSY  FPIGTINEFQ  FTYAMRDVFR  GNNGNSLSSI  PGIMGTWGNW300
GGSWGFIQPQ  NATVFITNWD  TERNGSSLNI  NNAAGNDAAN  QRYTLANIFM  LAQGYAEAQL360
YSGFKFSNTD  ADRPTTSPYS  GGVPQINVVW  DFAHRWTPLA  NMVGFRNASI  GQPQQNWIVG420
NNGNQVAFSR  GNVGFVALNN  SGSAWTRSFA  TGLAAGTYCN  VINGTKNAAG  TACTADSVTV480
DASGNASFTV  PANNSGSTPA  VAIYTGQKVT  GGGGGGTGTC  AVTFTIANAN  TVVGQNLRVV540
GSVSGLGAWA  PASGFALTIQ  GSGANVPWSG  TVTLPAGTAI  QYKYVKWNGS  NAVWESNQTT600
SSGNREFTSC  ASGSQARSDG  NFKF624

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help