CAZyme3D

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Entry ID

Information for CAZyme ID: ALU98128.1

Basic Information

GenBank IDALU98128.1
FamilyPL29
Sequence Length551
UniProt IDA0A0U2T9S2(100,100)Download
Average pLDDT?93.06
CAZy50 ID52226
CAZy50 RepNo, QTA33638.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1172567
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces globisporus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAVVASVATG  AATTGTAHAS  AVRPARPIQD  ATLWREFTAS  PLTHPQIPFV  GRAGYRAGSG60
LPRRGGRDLV  IDVVRDHGAR  PDGSADAAAA  INRAIAAAGE  RGGGTVTIPA  GTYRIDDVIR120
IGHSDVVVRG  AGSGATTLYA  TRSLTELIGV  YGSRYGGDKS  SWSWAGGLIW  LCPKDRWASL180
TDAIRAREWP  FEGWTGNRRD  AWRTLAVPAP  ARRGDRTVTV  ADARNLRPGR  LVLLRLADHT240
GHTLLQHMAG  DGAGARAYAW  ADKTKLTSYV  PYEWPVRVTG  VRGRRITLER  PLPLDLRPEW300
DPRLTTLVTP  LTGSGVEGLT  LEAAEKPQAP  HLLDQGFNGL  AFQCAYDCWA  DDVTVRHVDN360
GFGLIGASAC  TLRRTKVEGR  GAHHPYYCRE  GSHDNLVEDF  TIAARTTPAP  AGTQLHGINV420
EGLSSYNVWS  RGRMETGTFD  SHRGMPFANV  RTDITVNNDG  VHGGDASAGP  LFGARFTHWN480
IRVTNERAGL  MKIDGLAPYS  ATVGINEVRE  FGQIDVPDFP  GDLHARLEAY  GSPATVRPAN540
LYEAQRGVRL  R551

Predicted 3D structure by AlphaFold2 with pLDDT = 93.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL29(71-390)

MAVVASVATG  AATTGTAHAS  AVRPARPIQD  ATLWREFTAS  PLTHPQIPFV  GRAGYRAGSG60
LPRRGGRDLV  IDVVRDHGAR  PDGSADAAAA  INRAIAAAGE  RGGGTVTIPA  GTYRIDDVIR120
IGHSDVVVRG  AGSGATTLYA  TRSLTELIGV  YGSRYGGDKS  SWSWAGGLIW  LCPKDRWASL180
TDAIRAREWP  FEGWTGNRRD  AWRTLAVPAP  ARRGDRTVTV  ADARNLRPGR  LVLLRLADHT240
GHTLLQHMAG  DGAGARAYAW  ADKTKLTSYV  PYEWPVRVTG  VRGRRITLER  PLPLDLRPEW300
DPRLTTLVTP  LTGSGVEGLT  LEAAEKPQAP  HLLDQGFNGL  AFQCAYDCWA  DDVTVRHVDN360
GFGLIGASAC  TLRRTKVEGR  GAHHPYYCRE  GSHDNLVEDF  TIAARTTPAP  AGTQLHGINV420
EGLSSYNVWS  RGRMETGTFD  SHRGMPFANV  RTDITVNNDG  VHGGDASAGP  LFGARFTHWN480
IRVTNERAGL  MKIDGLAPYS  ATVGINEVRE  FGQIDVPDFP  GDLHARLEAY  GSPATVRPAN540
LYEAQRGVRL  R551

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help