Information for CAZyme ID: ALU89760.1
Basic Information
| GenBank ID | ALU89760.1 |
| Family | CBM48, GH13_9 |
| Sequence Length | 796 |
| UniProt ID | A0A0U2SGZ7(100,100) |
| Average pLDDT? | 91.86 |
| CAZy50 ID | 24242 |
| CAZy50 Rep | No, ABC35639.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1078773 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum rubrisubalbicans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSGMSVMAYR APGEPMETSP EASPASAPPS PESTALSLSF EEQGLLEALL AGRLAQPFGL | 60 |
| LGPRYASQTG GVSAIRTFHP GAAAVRVRCR QSGVLLGELQ PFQIDGQPSG FFSGVASGLD | 120 |
| QRRHQVPYVL EVDWLIPDGN RSVQTTEDPY AFGLLLGELD LHLLQEGRHR QLADCLGARP | 180 |
| MEIDGIPGTR FAVWAPNAER VSVVGDFNQW DGRRHVMRLR HEPGVWELFI PRIGPGDVYK | 240 |
| YEILGRGGVL LPLKADPVAR ATEAPPATAS VVVDARPYLW QDQQWMAERA QRQSLAAPMS | 300 |
| IYELHPASWR RIPEQAHRNL NWDELAEQLI PYVVAMGFTH IELMPVMEHP FGGSWGYQPI | 360 |
| SMFAPSARFG KPERFAAFVD RCHQAGIGVL LDWVPAHFPS DEHGLAQFDG TALYEHADPR | 420 |
| EGFHQDWNTL IFNLGRNEVR GFLIASALEW LEHFHVDGLR VDAVASMLYR DYSRKSGEWV | 480 |
| PNIHGGRENL EAVAFLRELN TVVAQRCPGA LMIAEESTSW PGVTAAVKEE TDHHGLGFSY | 540 |
| KWNMGWMNDT LRYMQHDPLF RRYHHHDMTF GLLYGFSENF ILPISHDEVV HGKRALLNKM | 600 |
| PGDQWRRFAN VRAYYGFMWT HPGKKLLFMG SEFGQPDEFD HDKSPYWHLL DEHGDHPAGH | 660 |
| RQLRQLVSDL NHLYRSEPAL HQRDCRADGF SWAVGDDSVN SVLAYFRYGE EGPPVLVVVN | 720 |
| LTPVPRSAYR IGVPPIGPGH NGVWREVLNT DAAVYGGSNS GNMGQVQVQE SGWHGHPVSI | 780 |
| ELNLPPLSTL ILRREP | 796 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.86 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(176-264)+GH13_9(331-635)
| MSGMSVMAYR APGEPMETSP EASPASAPPS PESTALSLSF EEQGLLEALL AGRLAQPFGL | 60 |
| LGPRYASQTG GVSAIRTFHP GAAAVRVRCR QSGVLLGELQ PFQIDGQPSG FFSGVASGLD | 120 |
| QRRHQVPYVL EVDWLIPDGN RSVQTTEDPY AFGLLLGELD LHLLQEGRHR QLADCLGARP | 180 |
| MEIDGIPGTR FAVWAPNAER VSVVGDFNQW DGRRHVMRLR HEPGVWELFI PRIGPGDVYK | 240 |
| YEILGRGGVL LPLKADPVAR ATEAPPATAS VVVDARPYLW QDQQWMAERA QRQSLAAPMS | 300 |
| IYELHPASWR RIPEQAHRNL NWDELAEQLI PYVVAMGFTH IELMPVMEHP FGGSWGYQPI | 360 |
| SMFAPSARFG KPERFAAFVD RCHQAGIGVL LDWVPAHFPS DEHGLAQFDG TALYEHADPR | 420 |
| EGFHQDWNTL IFNLGRNEVR GFLIASALEW LEHFHVDGLR VDAVASMLYR DYSRKSGEWV | 480 |
| PNIHGGRENL EAVAFLRELN TVVAQRCPGA LMIAEESTSW PGVTAAVKEE TDHHGLGFSY | 540 |
| KWNMGWMNDT LRYMQHDPLF RRYHHHDMTF GLLYGFSENF ILPISHDEVV HGKRALLNKM | 600 |
| PGDQWRRFAN VRAYYGFMWT HPGKKLLFMG SEFGQPDEFD HDKSPYWHLL DEHGDHPAGH | 660 |
| RQLRQLVSDL NHLYRSEPAL HQRDCRADGF SWAVGDDSVN SVLAYFRYGE EGPPVLVVVN | 720 |
| LTPVPRSAYR IGVPPIGPGH NGVWREVLNT DAAVYGGSNS GNMGQVQVQE SGWHGHPVSI | 780 |
| ELNLPPLSTL ILRREP | 796 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.