CAZyme3D

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Entry ID

Information for CAZyme ID: ALU45629.1

Basic Information

GenBank IDALU45629.1
FamilyAA10, CBM5
Sequence Length478
UniProt IDA0A0U2PEW5(100,100)Download
Average pLDDT?90.66
CAZy50 ID61850
CAZy50 RepNo, AOT10364.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID43658
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTYKLLSQQ  SAISALVLSA  LCYSDLAASH  GYMDFPLARQ  AICEDQGGYW  WPEDGSNIPN60
AACRAAYLES  GYVQFIQEHE  FAVNTPDYNN  QQAVEKNIPD  GTLCAAGSHE  KRGMNLPSAD120
WQKTDVRPNA  NGELAIRFHA  TTPHNPSFWK  FYLTKPGFNP  ATDVMTWGSI  DLITEIGNVD180
FVKDPDGKRI  YEMTIQIPQG  RSGDAILYTR  WQRNDVVGEG  FYNCSDINIV  SDSQPTDWYA240
AGYFVSRGQT  ANAGDLVWAR  VFDQNGQEIV  KHSLAVTAQN  QANWESVLAG  QLNATYANDV300
QVGVKQANGD  VLFDEANLLS  NQVFVTDAAY  TYNLTIVPKA  PNTPPTVHQP  DPVVMDENAQ360
VQVHVHAFDD  EQTELVYNWT  LPAGLSMAGS  GATISIQSGE  VSADTQYTVS  VAVSDGELVT420
SIDFTVTVKD  VPVSTFPQWK  ASKTYVGGDK  VSHGNKNYEA  KWWTRGEEPG  KAQVWKAL478

Predicted 3D structure by AlphaFold2 with pLDDT = 90.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(30-228)+CBM5(437-475)

MKTYKLLSQQ  SAISALVLSA  LCYSDLAASH  GYMDFPLARQ  AICEDQGGYW  WPEDGSNIPN60
AACRAAYLES  GYVQFIQEHE  FAVNTPDYNN  QQAVEKNIPD  GTLCAAGSHE  KRGMNLPSAD120
WQKTDVRPNA  NGELAIRFHA  TTPHNPSFWK  FYLTKPGFNP  ATDVMTWGSI  DLITEIGNVD180
FVKDPDGKRI  YEMTIQIPQG  RSGDAILYTR  WQRNDVVGEG  FYNCSDINIV  SDSQPTDWYA240
AGYFVSRGQT  ANAGDLVWAR  VFDQNGQEIV  KHSLAVTAQN  QANWESVLAG  QLNATYANDV300
QVGVKQANGD  VLFDEANLLS  NQVFVTDAAY  TYNLTIVPKA  PNTPPTVHQP  DPVVMDENAQ360
VQVHVHAFDD  EQTELVYNWT  LPAGLSMAGS  GATISIQSGE  VSADTQYTVS  VAVSDGELVT420
SIDFTVTVKD  VPVSTFPQWK  ASKTYVGGDK  VSHGNKNYEA  KWWTRGEEPG  KAQVWKAL478

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help