CAZyme3D

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Entry ID

Information for CAZyme ID: ALR78543.1

Basic Information

GenBank IDALR78543.1
FamilyGH8
Sequence Length369
UniProt IDA0A806XFF2(100,100)Download
Average pLDDT?93.00
CAZy50 ID97690
CAZy50 RepNo, AJR01156.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1334193
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusPluralibacter
Species[Enterobacter] lignolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMNVVRRAGL  ALLMLVTLQA  HAACSWPAWE  QFKTDYISDG  GRVIDPSDPR  KITTSEGQSY60
ALFFALVAND  RAAFATLLDW  TQNNLAAGDL  RAHIPAWLWG  QKAGDRWMVI  DSNSASDANL120
WIAWSLMEAG  RLWKMPQYSD  TGKALLARIA  AEEVVTIPKL  GAVLLPGKVG  FADDKGWRLN180
PSYLPPQLAR  YFARAGAPWP  AIQQTNLRLL  LETAPKGFAP  DWVRYDKKGG  WQLKQDKGLV240
GSYDAIRVYL  WVGMLHNDDP  QKSRLLAKFN  AMAAQTVRDG  LPPEKVDVET  GNATGNGPVG300
FSAALLPFLQ  DRDAQAVQRQ  RVADNFPGAN  AYYNYVLTLF  GQGWDQRRYR  FTAHGELQPD360
WGQECASSQ369

Predicted 3D structure by AlphaFold2 with pLDDT = 93.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(26-344)

MMNVVRRAGL  ALLMLVTLQA  HAACSWPAWE  QFKTDYISDG  GRVIDPSDPR  KITTSEGQSY60
ALFFALVAND  RAAFATLLDW  TQNNLAAGDL  RAHIPAWLWG  QKAGDRWMVI  DSNSASDANL120
WIAWSLMEAG  RLWKMPQYSD  TGKALLARIA  AEEVVTIPKL  GAVLLPGKVG  FADDKGWRLN180
PSYLPPQLAR  YFARAGAPWP  AIQQTNLRLL  LETAPKGFAP  DWVRYDKKGG  WQLKQDKGLV240
GSYDAIRVYL  WVGMLHNDDP  QKSRLLAKFN  AMAAQTVRDG  LPPEKVDVET  GNATGNGPVG300
FSAALLPFLQ  DRDAQAVQRQ  RVADNFPGAN  AYYNYVLTLF  GQGWDQRRYR  FTAHGELQPD360
WGQECASSQ369

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help