CAZyme3D

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Entry ID

Information for CAZyme ID: ALP43505.1

Basic Information

GenBank IDALP43505.1
FamilyAA10, CBM73
Sequence Length457
UniProt IDA0A0S2SP65(100,100)Download
Average pLDDT?83.36
CAZy50 ID68024
CAZy50 RepNo, QSR57499.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID652
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusAeromonas
SpeciesAeromonas schubertii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTATHLRALA  LLCTLGTSSA  VVAHGYISTP  ESRNALCKSG  GNIQCGAIQW  EPQSLEAPSG60
FPQGGPPDGQ  IASAGHRQFG  ELNAQTSDRW  TFTANHVTRN  WRYYLTRPEW  DPNRPLTRDA120
FEPTPFCVID  GGMKQPPKVM  THACTLPERS  GYQLILGVWE  VGDTSNSFYN  LIDARFRGGE180
PPSSPWQQGG  AIYPSLDLEM  GDRVLTRVFD  ANGERADLQT  TLTIASEEQG  QKNNWAHALA240
SRINAEQVNI  RAGQQGSDGT  FNPVYGQNLL  YLKQGSGLER  VEIQVEQQQP  PLEQSLSIGT300
LPSDHLLNEG  KLTLDFIVTV  RGEMTVTATL  YDHGGVARGE  VSQELSNEQR  TLSLVLEGLS360
AGHHQLVVKG  IPKKGGDALQ  QTADLMFSEV  GQSYDYRFPE  GLKRYEAGTR  VLQPKDGQIY420
RCKPFPYSGY  CTQWTSSATQ  YEPGSGSHWQ  SAWDKVN457

Predicted 3D structure by AlphaFold2 with pLDDT = 83.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(24-173)+CBM73(403-454)

MTATHLRALA  LLCTLGTSSA  VVAHGYISTP  ESRNALCKSG  GNIQCGAIQW  EPQSLEAPSG60
FPQGGPPDGQ  IASAGHRQFG  ELNAQTSDRW  TFTANHVTRN  WRYYLTRPEW  DPNRPLTRDA120
FEPTPFCVID  GGMKQPPKVM  THACTLPERS  GYQLILGVWE  VGDTSNSFYN  LIDARFRGGE180
PPSSPWQQGG  AIYPSLDLEM  GDRVLTRVFD  ANGERADLQT  TLTIASEEQG  QKNNWAHALA240
SRINAEQVNI  RAGQQGSDGT  FNPVYGQNLL  YLKQGSGLER  VEIQVEQQQP  PLEQSLSIGT300
LPSDHLLNEG  KLTLDFIVTV  RGEMTVTATL  YDHGGVARGE  VSQELSNEQR  TLSLVLEGLS360
AGHHQLVVKG  IPKKGGDALQ  QTADLMFSEV  GQSYDYRFPE  GLKRYEAGTR  VLQPKDGQIY420
RCKPFPYSGY  CTQWTSSATQ  YEPGSGSHWQ  SAWDKVN457

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help