CAZyme3D

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Entry ID

Information for CAZyme ID: ALM92018.1

Basic Information

GenBank IDALM92018.1
FamilyGH171
Sequence Length461
UniProt IDA0A0S1YNQ3(100,100)Download
Average pLDDT?82.02
CAZy50 ID73187
CAZy50 RepNo, VEL95554.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1160720
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAlteromonas
SpeciesAlteromonas stellipolaris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRIKSLLTFA  LLLSAAITLS  VSGHAQTVTR  AKTHDKAEVA  ESRLQVGAAQ  FNEYLPLLEG60
KRVSLVVNQS  SIIESPIIKG  SAVINSSPEP  THLVDALLNR  DINVVSIMSP  EHGFRGKAGA120
GEKIDNDVDV  KTGLPIHSLY  GKTKKPTADM  LANTDILVFD  IQDVGVRFYT  YLSTLHYVLE180
AAAEAHIPVI  VLDRPNPNGA  FTDGPILQSD  YASFVGMHAI  PVLHGMTLGE  LALMIVGEQW240
MTTDAIEGKQ  LAQQVNKHMQ  SQALLTVIPV  ANYYKQMPYS  LPVAPSPNLP  NDAAIALYPT300
LCFFEGTDVS  VGRGTNLPFQ  LIGHPVIALG  DENIDVVANQ  AAPSPKHNNT  TLKASFMTDA360
PISGLNIDVL  LDAYAQFNEQ  DITFFTRPDF  FDKLAGTDSL  RQAIIAGKTS  TQIQASWAEG420
LATFKQLRSP  YLLYQLMASE  LPDDVKSRVK  TINMKVATHY  E461

Predicted 3D structure by AlphaFold2 with pLDDT = 82.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(63-434)

MRIKSLLTFA  LLLSAAITLS  VSGHAQTVTR  AKTHDKAEVA  ESRLQVGAAQ  FNEYLPLLEG60
KRVSLVVNQS  SIIESPIIKG  SAVINSSPEP  THLVDALLNR  DINVVSIMSP  EHGFRGKAGA120
GEKIDNDVDV  KTGLPIHSLY  GKTKKPTADM  LANTDILVFD  IQDVGVRFYT  YLSTLHYVLE180
AAAEAHIPVI  VLDRPNPNGA  FTDGPILQSD  YASFVGMHAI  PVLHGMTLGE  LALMIVGEQW240
MTTDAIEGKQ  LAQQVNKHMQ  SQALLTVIPV  ANYYKQMPYS  LPVAPSPNLP  NDAAIALYPT300
LCFFEGTDVS  VGRGTNLPFQ  LIGHPVIALG  DENIDVVANQ  AAPSPKHNNT  TLKASFMTDA360
PISGLNIDVL  LDAYAQFNEQ  DITFFTRPDF  FDKLAGTDSL  RQAIIAGKTS  TQIQASWAEG420
LATFKQLRSP  YLLYQLMASE  LPDDVKSRVK  TINMKVATHY  E461

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help