CAZyme3D

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Entry ID

Information for CAZyme ID: ALL84155.1

Basic Information

GenBank IDALL84155.1
FamilyGT87
Sequence Length389
UniProt IDA0A0P0SI32(100,100)Download
Average pLDDT?91.05
CAZy50 ID84940
CAZy50 RepNo, BBG01683.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1096856
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. EC080619-01

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLLAVSLFW  SFIRLGGYAL  DLDVYRLGVQ  VWMAGGDMYG  PLPLPMNGPP  LPFIYPPFAA60
IAMVPLTVIP  YGAAFGTQFV  VSLLSLALCI  VLAIRAAWPA  GGWRAALVLG  VPALAATLLI120
EPVAQTYAFG  QINLVLMALV  AVDCLAPRTL  WPRGMLLGLA  AAIKLTPGGL  VLFFLVRRDW180
KAAGVAVVTG  VVATGIGFLV  DLDSSVRYWF  VGGPAAGVSG  STFFSNETVQ  ASLARMGLPE240
PWFTVLWLLI  VAGLLALAVP  VIRRSEPVIA  LSATAAVVLM  ATPTAWSHHW  VWVVPALIGI300
AAHAIRYRSV  AWGVVGAVIA  TIFFLAPFRW  LPNVWGVQMR  WTWYEQLLCA  SYVVPAVIAL360
ALGCWYVTRG  AGRPGGPAAP  APEMLRVGP389

Predicted 3D structure by AlphaFold2 with pLDDT = 91.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT87(53-283)

MPLLAVSLFW  SFIRLGGYAL  DLDVYRLGVQ  VWMAGGDMYG  PLPLPMNGPP  LPFIYPPFAA60
IAMVPLTVIP  YGAAFGTQFV  VSLLSLALCI  VLAIRAAWPA  GGWRAALVLG  VPALAATLLI120
EPVAQTYAFG  QINLVLMALV  AVDCLAPRTL  WPRGMLLGLA  AAIKLTPGGL  VLFFLVRRDW180
KAAGVAVVTG  VVATGIGFLV  DLDSSVRYWF  VGGPAAGVSG  STFFSNETVQ  ASLARMGLPE240
PWFTVLWLLI  VAGLLALAVP  VIRRSEPVIA  LSATAAVVLM  ATPTAWSHHW  VWVVPALIGI300
AAHAIRYRSV  AWGVVGAVIA  TIFFLAPFRW  LPNVWGVQMR  WTWYEQLLCA  SYVVPAVIAL360
ALGCWYVTRG  AGRPGGPAAP  APEMLRVGP389

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help