CAZyme3D

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Entry ID

Information for CAZyme ID: ALH25082.1

Basic Information

GenBank IDALH25082.1
FamilyGH5_5
Sequence Length244
UniProt IDA0A0N9QD55(100,100)Download
Average pLDDT?87.48
CAZy50 ID53850
CAZy50 RepNo, AGU11481.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID305
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia solanacearum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

CGGGDGDTTL  STAAATDTTT  LKTAATTSIS  PLWLTVAKDS  AAFTVSGTRT  VRYGAGSAWV60
AKSMSGTGQC  TAAFFGKDPA  AGVAKVCQVA  QGTGTLLWRG  VSLAGAEFGE  GSLPGTYGSN120
YIYPSADSAT  YYKNKGMNLV  RLPFRWERLQ  PTLNQALDAN  ELSRLTGFVN  AVTAAGQTVL180
LDPHNYARYY  GNVIGSSAVP  NSAYADFWRR  VATQFKGNAR  VIFGLMNEPN  SMPTEQWLSG240
ANAA244

Predicted 3D structure by AlphaFold2 with pLDDT = 87.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(98-244)

CGGGDGDTTL  STAAATDTTT  LKTAATTSIS  PLWLTVAKDS  AAFTVSGTRT  VRYGAGSAWV60
AKSMSGTGQC  TAAFFGKDPA  AGVAKVCQVA  QGTGTLLWRG  VSLAGAEFGE  GSLPGTYGSN120
YIYPSADSAT  YYKNKGMNLV  RLPFRWERLQ  PTLNQALDAN  ELSRLTGFVN  AVTAAGQTVL180
LDPHNYARYY  GNVIGSSAVP  NSAYADFWRR  VATQFKGNAR  VIFGLMNEPN  SMPTEQWLSG240
ANAA244

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help