CAZyme3D

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Entry ID

Information for CAZyme ID: ALG64896.1

Basic Information

GenBank IDALG64896.1
FamilyCBM49, GH9
Sequence Length611
UniProt IDA0A161CHV2(100,100)Download
Average pLDDT?90.75
CAZy50 ID45516
CAZy50 RepNo, CAG7875685.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID118781
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderMalpighiales
FamilySalicaceae
GenusPopulus
SpeciesPopulus tomentosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKSLNFGGLC  LLLGVLVLEA  LIAEGFNYGD  ALDKTLMFFE  AQRSGKLPAN  QRVKWRGDSG60
LKDGYLQGVN  LVGGYYDAGD  HVKFGLPMAY  TVTMLAWGAI  DFRKEITELD  QMGNALWSLR120
WGTDYFMKAH  TQPNVLWAQV  GDGDSDHYCW  ERAEDMTTPR  TAYKLDQNHP  GSDLAGETAA180
ALAASAIAFK  PYNSSYSNLL  LLHAKQLFTF  ADKYRGLYDD  SIQNAKQFYT  SSGYSDELLW240
AAAWLYRATD  DEYFLKYVVD  NAVYMGGTGW  AVKEFSWDNK  YAGVQILLSQ  ILLEGRGGAY300
TSTLKQYQAK  ANYFACACLQ  KNDGYNIHKT  PGGLMYVREW  NTLQYASSAA  FLLAVYSDSL360
SAANAKLTCP  EGQIPPQALL  DFARSQADYF  LGKNPKSMSY  LVGYGQQYPI  HAHHRGSSIA420
SIFSLQSTVE  CVQGFEKWYR  RPEGNPNVIH  GALVGGPDQN  DNFSDDRSNY  EQTEPTLSGC480
APLVGLFSKL  QTPVPRPTTP  HSYQETQKTQ  EPYRSHAPVE  FLHSITKTWT  VGPTTYYRHK540
VIIKTKSEKP  IKDLKLVIED  LSGSIWGLNP  TQQRNTYELP  QWQKVLQPGS  ECSFVYVQGG600
PQAKVTVQSY  N611

Predicted 3D structure by AlphaFold2 with pLDDT = 90.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH9(27-487)+CBM49(519-598)

MKSLNFGGLC  LLLGVLVLEA  LIAEGFNYGD  ALDKTLMFFE  AQRSGKLPAN  QRVKWRGDSG60
LKDGYLQGVN  LVGGYYDAGD  HVKFGLPMAY  TVTMLAWGAI  DFRKEITELD  QMGNALWSLR120
WGTDYFMKAH  TQPNVLWAQV  GDGDSDHYCW  ERAEDMTTPR  TAYKLDQNHP  GSDLAGETAA180
ALAASAIAFK  PYNSSYSNLL  LLHAKQLFTF  ADKYRGLYDD  SIQNAKQFYT  SSGYSDELLW240
AAAWLYRATD  DEYFLKYVVD  NAVYMGGTGW  AVKEFSWDNK  YAGVQILLSQ  ILLEGRGGAY300
TSTLKQYQAK  ANYFACACLQ  KNDGYNIHKT  PGGLMYVREW  NTLQYASSAA  FLLAVYSDSL360
SAANAKLTCP  EGQIPPQALL  DFARSQADYF  LGKNPKSMSY  LVGYGQQYPI  HAHHRGSSIA420
SIFSLQSTVE  CVQGFEKWYR  RPEGNPNVIH  GALVGGPDQN  DNFSDDRSNY  EQTEPTLSGC480
APLVGLFSKL  QTPVPRPTTP  HSYQETQKTQ  EPYRSHAPVE  FLHSITKTWT  VGPTTYYRHK540
VIIKTKSEKP  IKDLKLVIED  LSGSIWGLNP  TQQRNTYELP  QWQKVLQPGS  ECSFVYVQGG600
PQAKVTVQSY  N611

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help