CAZyme3D

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Entry ID

Information for CAZyme ID: ALE04586.1

Basic Information

GenBank IDALE04586.1
FamilyGH13_21
Sequence Length622
UniProt IDA0A0M5KXG4(100,100)Download
Average pLDDT?95.30
CAZy50 ID39792
CAZy50 RepNo, BCW65811.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1704044
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter sp. ERGS1:01

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLARQPHHDG  SVLYVEDKLP  VLGERLRLRL  RVPHAWGTPS  RIWVRSVQDA  EPRYDEAKHL60
GDTATDGWAW  WEASMLVVNP  VALYRFVIEV  PTAGQGNVYW  TLNNSGLFDR  DTSDYQDFRV120
TTAARPPQWS  TDAVMYQVFP  DRFARSEAAA  ALPAPDWAVP  CSWQTPVQGT  GPEAGTQFYG180
GDLWGVRDKL  DHLTELGVDI  LYLTPFFPGR  SNHRYDASTF  KHVDPLLGGD  QALVALVEAA240
HARGMKVMGD  LTANHTGDAH  EWFQRALADP  ASPEADFYYF  NADHSDYESW  WGVKSLPKLN300
WASPGLREAF  VTGEDSVVAH  WLKPPFNLDG  WRIDVGNMTG  RLGAQDINRE  VAALIQHRVL360
GINPDALLLG  EETSDAGADV  DGFGWQGAMT  YSNFTRPMWQ  WLARPGVRVD  FFGTPLDGPN420
RVGAETVLAT  HRDLSGAFSW  PVRNATMNAL  NTHDTARAAT  VMVDGGVVVA  AALSMLLPGI480
PVVFAGDEFG  LQGDRGESSR  TPMPWGEPDR  IGADFTGAYA  ALTALRHSSP  AIAHGSVRWL540
LADGDVLAFA  RESEQESLLV  IAVRADVPKL  GLAALDLGAA  GAAALDEPPL  FRTGNITTGE600
TIGLAGPGIY  VWRLPGVRPP  AS622

Predicted 3D structure by AlphaFold2 with pLDDT = 95.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_21(181-494)

MLARQPHHDG  SVLYVEDKLP  VLGERLRLRL  RVPHAWGTPS  RIWVRSVQDA  EPRYDEAKHL60
GDTATDGWAW  WEASMLVVNP  VALYRFVIEV  PTAGQGNVYW  TLNNSGLFDR  DTSDYQDFRV120
TTAARPPQWS  TDAVMYQVFP  DRFARSEAAA  ALPAPDWAVP  CSWQTPVQGT  GPEAGTQFYG180
GDLWGVRDKL  DHLTELGVDI  LYLTPFFPGR  SNHRYDASTF  KHVDPLLGGD  QALVALVEAA240
HARGMKVMGD  LTANHTGDAH  EWFQRALADP  ASPEADFYYF  NADHSDYESW  WGVKSLPKLN300
WASPGLREAF  VTGEDSVVAH  WLKPPFNLDG  WRIDVGNMTG  RLGAQDINRE  VAALIQHRVL360
GINPDALLLG  EETSDAGADV  DGFGWQGAMT  YSNFTRPMWQ  WLARPGVRVD  FFGTPLDGPN420
RVGAETVLAT  HRDLSGAFSW  PVRNATMNAL  NTHDTARAAT  VMVDGGVVVA  AALSMLLPGI480
PVVFAGDEFG  LQGDRGESSR  TPMPWGEPDR  IGADFTGAYA  ALTALRHSSP  AIAHGSVRWL540
LADGDVLAFA  RESEQESLLV  IAVRADVPKL  GLAALDLGAA  GAAALDEPPL  FRTGNITTGE600
TIGLAGPGIY  VWRLPGVRPP  AS622

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help