CAZyme3D

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Entry ID

Information for CAZyme ID: ALC31693.1

Basic Information

GenBank IDALC31693.1
FamilyGH55
Sequence Length687
UniProt IDA0A0M3QPF8(100,100)Download
Average pLDDT?92.32
CAZy50 ID14428
CAZy50 RepNo, SCG44968.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1649184
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. CFMR 7

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYTSRPTDPT  AVLLGSQSFQ  AHADGTGDDT  AVLQAAVDEA  SRRGIANKLG  DILGGARGFP60
HGDGGGIVLV  PSGTYRLSAP  IQVHDSVRII  GYGPSRPVFV  LGPSTPGYSS  GTPRELFGFL120
RRPLGGPVSY  ANNDTFGTAL  INLDIRIGPG  NPDAMGVRFG  GAQLCLLQDL  DIEVGDGLCG180
IDHNANLIHR  VRVTGGQVGL  RAWAASAGWQ  TTLLDCRFTG  QSHAAVTMGN  DAKLVVVRAV240
IAKTPRAFEA  APGQTQHLYI  QDTHLDHVSD  VAVTLNDSTS  LPGSENDLVR  LSNQLTLLNC300
TTASTPDLLL  LTPSGARTTA  PEPAAHIREL  THGLRVEEAL  AADESRREGI  YLAAIAGAGT360
SRIRSALRSD  TPAPPPVKKW  VSVTDVARRL  GRTVGRGQDD  LAVFQAAVDQ  HDVVFVPIGR420
YLLTGTLKLR  RTTQLIGLHP  RQTWLLAADR  HPNFSAPQTP  RALVSTPRGG  RNTITGIGLD480
TAQRTPGAVN  LLWQSADGSY  LADIATQFVK  WHPEGAAETG  NPGYTYRGTH  KYTIWVRGGG540
GTFANIWSVN  GWADNGLLVE  DTHEPARLYE  LSVEHHETRE  VVLRRVSNWQ  FLGLQTEDHI600
HGWRSQAVEI  ERSRDLLFAN  SVFFRVATVL  GPHPCSVGIL  DSKRITLRGH  RGFRDKTPEY660
TQWGAAVRDR  RTGRTVPEVE  YTLIRTR687

Predicted 3D structure by AlphaFold2 with pLDDT = 92.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH55(17-497)

MYTSRPTDPT  AVLLGSQSFQ  AHADGTGDDT  AVLQAAVDEA  SRRGIANKLG  DILGGARGFP60
HGDGGGIVLV  PSGTYRLSAP  IQVHDSVRII  GYGPSRPVFV  LGPSTPGYSS  GTPRELFGFL120
RRPLGGPVSY  ANNDTFGTAL  INLDIRIGPG  NPDAMGVRFG  GAQLCLLQDL  DIEVGDGLCG180
IDHNANLIHR  VRVTGGQVGL  RAWAASAGWQ  TTLLDCRFTG  QSHAAVTMGN  DAKLVVVRAV240
IAKTPRAFEA  APGQTQHLYI  QDTHLDHVSD  VAVTLNDSTS  LPGSENDLVR  LSNQLTLLNC300
TTASTPDLLL  LTPSGARTTA  PEPAAHIREL  THGLRVEEAL  AADESRREGI  YLAAIAGAGT360
SRIRSALRSD  TPAPPPVKKW  VSVTDVARRL  GRTVGRGQDD  LAVFQAAVDQ  HDVVFVPIGR420
YLLTGTLKLR  RTTQLIGLHP  RQTWLLAADR  HPNFSAPQTP  RALVSTPRGG  RNTITGIGLD480
TAQRTPGAVN  LLWQSADGSY  LADIATQFVK  WHPEGAAETG  NPGYTYRGTH  KYTIWVRGGG540
GTFANIWSVN  GWADNGLLVE  DTHEPARLYE  LSVEHHETRE  VVLRRVSNWQ  FLGLQTEDHI600
HGWRSQAVEI  ERSRDLLFAN  SVFFRVATVL  GPHPCSVGIL  DSKRITLRGH  RGFRDKTPEY660
TQWGAAVRDR  RTGRTVPEVE  YTLIRTR687

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help