CAZyme3D

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Entry ID

Information for CAZyme ID: ALC30277.1

Basic Information

GenBank IDALC30277.1
FamilyCBM20, GH13_32
Sequence Length578
UniProt IDA0A0M4DRI6(100,100)Download
Average pLDDT?89.31
CAZy50 ID37232
CAZy50 RepNo, BAJ28149.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1649184
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. CFMR 7

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARRPLSAAL  ALVAGAAAAL  VIPTGFGTAS  PAQAAAPGDK  DVTAVLFEWK  FASIAKACTD60
SLGPAGYGYV  QVSPPQEHIQ  GSQWWTSYQP  VSYKIAGRLG  DRAAFSAMVN  TCHAAGVKVI120
ADSVINHMSA  GSGTGTGGSS  YTKYNYPGIY  SGSDMDDCRS  EITNYQDRAN  VQNCELVGLA180
DLDTGEEYVR  GRIAGYLNDL  LSLGVDGFRI  DAAKHMPAAD  LANIKSRLTN  PNVYWKHEAI240
YGAGEAVSPS  EYLGSGDVQE  FRYGRSLKQV  FLNENLAHLK  NFGEAWGFME  SGKSGVFVDN300
HDTERGGDTL  NYKNGSAYTL  ASVFMLAWPY  GSPDVHSGYE  FSNHDAGPPN  DGQVNACYSD360
GWKCQHDWRE  ISSMVGFRNE  ARGQAVTNWW  DNGGDQIAFG  RGNKAYVAIN  HEGSSLTRTF420
QTSLPAGDYC  DVQSGRGITV  NGSGQFTATL  GAGTAVALHT  GARTCSGGGG  SNPDPGPGNG480
QSGASFGVNA  TTQLGQNIHV  TGDQAALGNW  NPANAPKLDP  ATYPVWKLDV  NLPAGTTFAY540
KYVRKDAGGN  VTWESGANRT  ATVPASGKVT  LTADVWRG578

Predicted 3D structure by AlphaFold2 with pLDDT = 89.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_32(66-329)+CBM20(485-568)

MARRPLSAAL  ALVAGAAAAL  VIPTGFGTAS  PAQAAAPGDK  DVTAVLFEWK  FASIAKACTD60
SLGPAGYGYV  QVSPPQEHIQ  GSQWWTSYQP  VSYKIAGRLG  DRAAFSAMVN  TCHAAGVKVI120
ADSVINHMSA  GSGTGTGGSS  YTKYNYPGIY  SGSDMDDCRS  EITNYQDRAN  VQNCELVGLA180
DLDTGEEYVR  GRIAGYLNDL  LSLGVDGFRI  DAAKHMPAAD  LANIKSRLTN  PNVYWKHEAI240
YGAGEAVSPS  EYLGSGDVQE  FRYGRSLKQV  FLNENLAHLK  NFGEAWGFME  SGKSGVFVDN300
HDTERGGDTL  NYKNGSAYTL  ASVFMLAWPY  GSPDVHSGYE  FSNHDAGPPN  DGQVNACYSD360
GWKCQHDWRE  ISSMVGFRNE  ARGQAVTNWW  DNGGDQIAFG  RGNKAYVAIN  HEGSSLTRTF420
QTSLPAGDYC  DVQSGRGITV  NGSGQFTATL  GAGTAVALHT  GARTCSGGGG  SNPDPGPGNG480
QSGASFGVNA  TTQLGQNIHV  TGDQAALGNW  NPANAPKLDP  ATYPVWKLDV  NLPAGTTFAY540
KYVRKDAGGN  VTWESGANRT  ATVPASGKVT  LTADVWRG578

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help